View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12458_high_2 (Length: 335)

Name: NF12458_high_2
Description: NF12458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12458_high_2
NF12458_high_2
[»] chr5 (7 HSPs)
chr5 (6-275)||(37707273-37707542)
chr5 (21-275)||(37443068-37443322)
chr5 (270-335)||(37704455-37704520)
chr5 (275-335)||(37698637-37698697)
chr5 (270-335)||(37698974-37699041)
chr5 (278-335)||(37437521-37437578)
chr5 (146-179)||(39647259-39647292)
[»] chr7 (1 HSPs)
chr7 (49-102)||(34925263-34925316)
[»] chr8 (1 HSPs)
chr8 (58-129)||(11501488-11501559)
[»] chr1 (2 HSPs)
chr1 (111-173)||(4541583-4541645)
chr1 (45-82)||(10363462-10363499)
[»] chr6 (1 HSPs)
chr6 (58-103)||(21901327-21901372)
[»] chr2 (1 HSPs)
chr2 (45-102)||(38434185-38434242)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 37707273 - 37707542
Alignment:
Q  6 gtagattatactgtgaaatatcttgttggttttcaccagaatcgcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctataatg 105  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37707273 gtagattataccgtgaaatatcttgtgggttttcaccagaatcgcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctataatg 37707372  T
Q  106 gcactagagccactatttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactatagctactatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||    
T  37707373 gcactagagccactatttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactagagccgctatt 37707472  T
Q  206 ttacaacactggtttcctaccaaaagtaaaaacattctactaaagacagtacagagaagcacaacccaaa 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37707473 ttacaacactggtttcctaccaaaagtaaaaacattctactaaagacagtacagagaagcacaacccaaa 37707542  T

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Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 37443068 - 37443322
Alignment:
Q  21 aaatatcttgttggttttcaccagaatcgcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccacta 120  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||||    
T  37443068 aaatatcttgttggttttcaccagaatcgcagatcacagaaaataacactttgttcaaattttgctaagctacaatgctacagtgacactagagccacta 37443167  T
Q  121 tttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactatagctactattttacaacactggttt 220  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37443168 tttaacaaaactatatcgaataacgtatcgcaaaacaataacgatttattcaaattccagtatggcgtacactatagctgctattttacaacactggttt 37443267  T
Q  221 cctaccaaaagtaaaaacattctactaaagacagtacagagaagcacaacccaaa 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37443268 cctaccaaaagtaaaaacattctactaaagacagtacagagaagcacaacccaaa 37443322  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 37704520 - 37704455
Alignment:
Q  270 cccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704520 cccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg 37704455  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 37698697 - 37698637
Alignment:
Q  275 aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg 335  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  37698697 aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttgg 37698637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 37699041 - 37698974
Alignment:
Q  270 cccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg 335  Q
    ||||| ||||||||||||||||| |||||||||  |||| |||||||||||||| |||| ||||||||    
T  37699041 cccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg 37698974  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 37437578 - 37437521
Alignment:
Q  278 aaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg 335  Q
    |||| |||||||||  |||||| |||||| ||||||||||||||||||  ||||||||    
T  37437578 aaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttgg 37437521  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 39647259 - 39647292
Alignment:
Q  146 tatcgcaaaacaataacgatttattcaaattcca 179  Q
    ||||||| ||||||||||||||||||||||||||    
T  39647259 tatcgcagaacaataacgatttattcaaattcca 39647292  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 34925263 - 34925316
Alignment:
Q  49 gcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctata 102  Q
    ||||||| ||||||||| || |||||||||||||||||| ||||||||||||||    
T  34925263 gcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctata 34925316  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 11501488 - 11501559
Alignment:
Q  58 ggaaaataacactttgttcaaattctgctaagctacaatgctataatggcactagagccactatttaacaaa 129  Q
    ||||||||||| |||||||||||||  ||| |||| | ||||||||||  |||| ||||||||||| |||||    
T  11501488 ggaaaataacagtttgttcaaattccactatgctagagtgctataatgctactatagccactatttgacaaa 11501559  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 4541645 - 4541583
Alignment:
Q  111 agagccactatttaacaaaactatatcaaataacgtatcgcaaaacaataacgatttattcaa 173  Q
    ||||||||||||| |||| ||| || |||||| | ||| |||||||||||||||||| |||||    
T  4541645 agagccactatttgacaacactgtaccaaatagcatattgcaaaacaataacgatttgttcaa 4541583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 10363499 - 10363462
Alignment:
Q  45 aatcgcagatcatggaaaataacactttgttcaaattc 82  Q
    ||||||||||||||||||||| || |||||||||||||    
T  10363499 aatcgcagatcatggaaaatagcattttgttcaaattc 10363462  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 21901372 - 21901327
Alignment:
Q  58 ggaaaataacactttgttcaaattctgctaagctacaatgctataa 103  Q
    |||||||| ||||||||| ||||||||||| ||||||||| |||||    
T  21901372 ggaaaatagcactttgtttaaattctgctacgctacaatgttataa 21901327  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 38434242 - 38434185
Alignment:
Q  45 aatcgcagatcatggaaaataacactttgttcaaattctgctaagctacaatgctata 102  Q
    ||||||||| || |||||||| || |||||||||||||||||| | |||| |||||||    
T  38434242 aatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctata 38434185  T

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