View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12459_high_5 (Length: 404)

Name: NF12459_high_5
Description: NF12459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12459_high_5
NF12459_high_5
[»] chr5 (3 HSPs)
chr5 (7-370)||(7010566-7010942)
chr5 (142-242)||(34731215-34731315)
chr5 (149-242)||(16290794-16290887)
[»] scaffold1298 (1 HSPs)
scaffold1298 (7-149)||(1980-2120)
[»] chr3 (5 HSPs)
chr3 (153-248)||(39795319-39795414)
chr3 (142-243)||(7038549-7038650)
chr3 (142-244)||(45818671-45818773)
chr3 (165-244)||(32490847-32490926)
chr3 (176-216)||(41865837-41865877)
[»] chr8 (4 HSPs)
chr8 (153-244)||(12595855-12595946)
chr8 (162-245)||(26543874-26543957)
chr8 (154-244)||(40028766-40028856)
chr8 (164-216)||(3346410-3346462)
[»] chr1 (5 HSPs)
chr1 (147-215)||(30209719-30209787)
chr1 (142-245)||(42472062-42472165)
chr1 (153-216)||(4593714-4593777)
chr1 (164-243)||(49236112-49236191)
chr1 (142-204)||(49287981-49288043)
[»] chr2 (5 HSPs)
chr2 (142-245)||(40054532-40054635)
chr2 (147-248)||(36241427-36241528)
chr2 (149-216)||(27338715-27338782)
chr2 (165-206)||(36264547-36264588)
chr2 (142-251)||(6452401-6452509)
[»] chr4 (4 HSPs)
chr4 (142-205)||(36625605-36625668)
chr4 (142-216)||(33451295-33451369)
chr4 (142-244)||(19181482-19181584)
chr4 (146-211)||(35074377-35074442)
[»] chr7 (1 HSPs)
chr7 (142-216)||(39594607-39594681)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 370
Target Start/End: Original strand, 7010566 - 7010942
Alignment:
7 gcagcagagaatatggagagaagtgggattaaatcacaaagagtgggagtcaagggaatcgaagagggtaagcgcgtgtttatgttatcctatttgtaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
7010566 gcagcagagaatatggagagaagtgggattaaatcacaaagagtgggagtcaagggaatcgaagagggtaagcacgtgtttatgctatcctatttgtaac 7010665  T
107 ccaactaaaataaaggattagaataatgaaagatgaataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
7010666 ccaactaaaataaaggattagaataatgaaagatgaataggattattttatcatatcttattagtgcaccaaataagagatttaagtaggatatgataat 7010765  T
207 tttatcatataatgtctctttatccttcgcaccaaacgaaccgtataccattaagagcggatttagaaataaattattagcgagactaaatttattgacc 306  Q
    |||||||||||||| ||| ||||||| ||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||    
7010766 tttatcatataatgcctccttatcctacgcaccaaacgaatcgtataccactaaggacggatttagaaataaattattagcgagactaaatttattgacc 7010865  T
307 taagaactaaattttatt-------------tactaaaaatagttgtaacaattaaatttataaagaacttgtcaac 370  Q
    ||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||    
7010866 taagaactaaattttatttacttaaaagtaatactaaaaatagttgtaacaattaaatttataaagaacttgtcaac 7010942  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 34731315 - 34731215
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 241  Q
    |||||| ||| |||||| | ||||||| |||||||||| ||| ||||||| |||||||||||| | |||||||||  | |||||||||| | ||||||||    
34731315 aataggtttagtttatcctttcctattggtgcaccaaacaagggatttaaataggatatgatagtgttatcatatcctatctctttatcatgcgcaccaa 34731216  T
242 a 242  Q
    |    
34731215 a 34731215  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 16290794 - 16290887
Alignment:
149 ttattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaa 242  Q
    |||||||||| | ||||||  | |||||||| ||  |||||||  |||||| ||||||||||||||||  |||||||||||||| |||||||||    
16290794 ttattttatcctttcctatgggagcaccaaacaaaggatttaaacaggataagataattttatcatatcctgtctctttatcctgcgcaccaaa 16290887  T

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Target: scaffold1298 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold1298
Description:

Target: scaffold1298; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 2120 - 1980
Alignment:
7 gcagcagagaatatggagagaagtgggattaaatcacaaagagtgggagtcaagggaatcgaagagggtaagcgcgtgtttatgttatcctatttgtaac 106  Q
    |||||||| |||||||||| |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
2120 gcagcagaaaatatggagaaaagtgggattaaattacaaag--tgggagtcatgggaatcgaagagggtaagcgcgtgtttatgctatcctatttgtaac 2023  T
107 ccaactaaaataaaggattagaataatgaaagatgaataggat 149  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||    
2022 ccaactaaaacaaatgattagaataatgaaggatgaataggat 1980  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 39795319 - 39795414
Alignment:
153 tttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacgaacc 248  Q
    |||||||||| ||||| |||||||||| || | ||||||||||||||||||| | ||||||||| |||||||| |||||| |||||||||| ||||    
39795319 tttatcatattctattggtgcaccaaacaacatatttaagtaggatatgatagtgttatcatatcatgtctctctatcctgcgcaccaaacaaacc 39795414  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 7038650 - 7038549
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 241  Q
    |||||| ||| |||||||||||||||||||| |||||||||  ||||||| ||||||| |||||||||||||||| | |||||| |||| | |||| |||    
7038650 aataggtttaatttatcatatcctattagtgtaccaaataatggatttaaataggataagataattttatcatatcaggtctctctatcatgcgcatcaa 7038551  T
242 ac 243  Q
    ||    
7038550 ac 7038549  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 45818671 - 45818773
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 241  Q
    |||||| |||||||||| | | ||| |  ||||||||| ||  |||||||||||||||||||| | |||||||||  |||||  ||||||||||||||||    
45818671 aataggtttattttatcttttgctactgatgcaccaaacaacggatttaagtaggatatgatagtgttatcatatcctgtcttcttatccttcgcaccaa 45818770  T
242 acg 244  Q
    |||    
45818771 acg 45818773  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 32490926 - 32490847
Alignment:
165 tattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacg 244  Q
    |||| |||||||||| ||  ||||||| ||| |||||||| | |||||||||  |||||||||||||| |||||||||||    
32490926 tattggtgcaccaaacaaaggatttaaatagaatatgatagtgttatcatatcctgtctctttatcctgcgcaccaaacg 32490847  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 41865837 - 41865877
Alignment:
176 caaataagagatttaagtaggatatgataattttatcatat 216  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
41865837 caaatatgagatttaagcgggatatgataattttatcatat 41865877  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 12595855 - 12595946
Alignment:
153 tttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacg 244  Q
    ||||||||||| ||||| ||||||||| || ||||||||  |||||| |||||||||||||||| |||||||| |||| | |||||||||||    
12595855 tttatcatatcatattactgcaccaaacaaaagatttaaacaggataggataattttatcatatcatgtctctctatcttgcgcaccaaacg 12595946  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 26543957 - 26543874
Alignment:
162 tcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacga 245  Q
    ||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||  ||||||  |||||| ||||||||||||    
26543957 tcctattggtgcaccaaacaagaaatttgagtaggatatgataattttatcatatcctgtctccctatcctgcgcaccaaacga 26543874  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 40028856 - 40028766
Alignment:
154 ttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacg 244  Q
    ||||||| |||| || | |||||||| || ||||| | | ||||||||||| ||| |||||||  |||||| ||||||| |||||||||||    
40028856 ttatcatttcctgttggcgcaccaaacaacagattgaggcaggatatgatattttaatcatatcctgtctccttatcctgcgcaccaaacg 40028766  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 3346462 - 3346410
Alignment:
164 ctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 216  Q
    |||||||||||||||| ||   |||||| ||||||| ||||||||||||||||    
3346462 ctattagtgcaccaaacaatgaatttaattaggataggataattttatcatat 3346410  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 30209787 - 30209719
Alignment:
147 gattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcata 215  Q
    |||||||||||||| | ||||| ||| |||||| || ||||||||||||||||||||||||||||||||    
30209787 gattattttatcattttctattggtgtaccaaacaacagatttaagtaggatatgataattttatcata 30209719  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 42472062 - 42472165
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 241  Q
    |||||| |||||||||||| ||||| |  ||||||||| ||  |||||||||||||||||| | | |||||||||  |||||  ||||||| ||||||||    
42472062 aataggtttattttatcatttcctactgatgcaccaaacaacggatttaagtaggatatgacagtgttatcatattctgtcttcttatcctgcgcaccaa 42472161  T
242 acga 245  Q
    ||||    
42472162 acga 42472165  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 4593777 - 4593714
Alignment:
153 tttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 216  Q
    |||||||| | ||||| ||||| |||| ||||||||||||||| |||||||| | |||||||||    
4593777 tttatcattttctattggtgcatcaaacaagagatttaagtagaatatgatagtgttatcatat 4593714  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 49236191 - 49236112
Alignment:
164 ctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaac 243  Q
    ||||| |||||||||| || |||||| |  |||||||||||||| ||||||||  |||||  ||||||| ||||||||||    
49236191 ctattggtgcaccaaacaatagatttcatcaggatatgataattgtatcatatcctgtctagttatcctgcgcaccaaac 49236112  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 49288043 - 49287981
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgata 204  Q
    |||||| |||||||||||| |  |||| ||||||||||||| | |||||| ||||||||||||    
49288043 aataggtttattttatcattttgtattggtgcaccaaataacaaatttaaataggatatgata 49287981  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 40054532 - 40054635
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 241  Q
    |||||| ||| |||||||| | ||||| |||||||||| ||||||||||| |||||||| ||| | ||||||||| ||||||| ||||| | |||| |||    
40054532 aataggtttagtttatcattttctattggtgcaccaaacaagagatttaaataggatataatagtgttatcatatcatgtctcgttatcatgcgcatcaa 40054631  T
242 acga 245  Q
    ||||    
40054632 acga 40054635  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 36241528 - 36241427
Alignment:
147 gattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaaacgaa 246  Q
    |||||||||||||| | |||||| || |||||| ||  |||||||||  |||||||||||||||||||||  |||||  ||||| |  ||||||||||||    
36241528 gattattttatcattttctattattgtaccaaacaaatgatttaagtgagatatgataattttatcatattctgtcttcttatcatgtgcaccaaacgaa 36241429  T
247 cc 248  Q
    ||    
36241428 cc 36241427  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 27338782 - 27338715
Alignment:
149 ttattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 216  Q
    ||||||||||||||| | |||||||| |||| | ||||||||||||||||||||| | | ||||||||    
27338782 ttattttatcatatcattttagtgcatcaaacatgagatttaagtaggatatgattaatgtatcatat 27338715  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 36264588 - 36264547
Alignment:
165 tattagtgcaccaaataagagatttaagtaggatatgataat 206  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
36264588 tattagtgcaacaaataagagatttaagtaggctatgataat 36264547  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 6452509 - 6452401
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 241  Q
    |||||| ||| ||||||||||| |||| ||||| ||||  |  ||||||| | ||||| ||||||||||||||||  ||||||  |||| | ||||||||    
6452509 aataggtttaatttatcatatcttattggtgcatcaaaccatggatttaaattggataggataattttatcatatcctgtctc-ctatcatgcgcaccaa 6452411  T
242 acgaaccgta 251  Q
    || |||||||    
6452410 acaaaccgta 6452401  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 36625605 - 36625668
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataa 205  Q
    |||||| ||| ||||||||||||||||||||||||||| || | |||||| |||||||||||||    
36625605 aataggtttaatttatcatatcctattagtgcaccaaacaacaaatttaaataggatatgataa 36625668  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 33451369 - 33451295
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 216  Q
    |||||| ||||||||||||||| |||| |||||||||| ||   |||||||||||||| |||| |||||||||||    
33451369 aataggtttattttatcatatcatattggtgcaccaaacaacgaatttaagtaggatacgatagttttatcatat 33451295  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 19181482 - 19181584
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatataatgtctctttatccttcgcaccaa 241  Q
    |||||| ||| ||||||||||| | || |||||||||| || |||||  |  |||||| |||||||||||||||| |||||||| |||| |  |||||||    
19181482 aataggtttaatttatcatatcatgttggtgcaccaaacaatagattggatcaggataggataattttatcatatcatgtctctctatcatgtgcaccaa 19181581  T
242 acg 244  Q
    |||    
19181582 acg 19181584  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 35074442 - 35074377
Alignment:
146 ggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttat 211  Q
    ||||||||||||||| |  |||| |||||| ||| ||   ||||||||||||||||||||||||||    
35074442 ggattattttatcattttttattggtgcacaaaacaaagaatttaagtaggatatgataattttat 35074377  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 39594681 - 39594607
Alignment:
142 aataggattattttatcatatcctattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 216  Q
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39594681 aataggtttaatttagcatatcttattggtgcaccaaacaacggatttaagtaggatatgatagttttatcatat 39594607  T

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