View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12459_low_11 (Length: 264)
Name: NF12459_low_11
Description: NF12459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12459_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 8331492 - 8331738
Alignment:
| Q |
10 |
cctgtgagccatttgtgaatactattttggaacctgtccatacacaattcataataaaatcatagaagaatgtaaaatatgtagtgtccaaccaaatatg |
109 |
Q |
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| T |
8331492 |
cctgtgagccatttgtgaatactattttggaacctgtccatacacaattcataataaaatcatagaagaatgtaaaatatgtagtgtccaaccaaatatg |
8331591 |
T |
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| Q |
110 |
cctactgcgaaaaaacccaagttacacaggttagaaatatgaccttnnnnnnngcttataaagcttaggcaatcctcacctaacaaaaaggatgatttag |
209 |
Q |
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| T |
8331592 |
cctactgcgaaaaaacccaagttacacaggttagacatatgaccttaaaaaaagcttataaagcttaggcaatcctcacctaacaaaaaggatgatttag |
8331691 |
T |
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| Q |
210 |
gcccgaagtcccaattctaagatggtacaagagtttatcacaggttc |
256 |
Q |
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| T |
8331692 |
gcccgaagtcccaattctaagatggtacaagagtttatcataggttc |
8331738 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 32276088 - 32276042
Alignment:
| Q |
10 |
cctgtgagccatttgtgaatactattttggaacctgtccatacacaa |
56 |
Q |
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| T |
32276088 |
cctgtgagccatttgtaaatattatttttgaacctgttcatacacaa |
32276042 |
T |
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