View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12459_low_14 (Length: 242)

Name: NF12459_low_14
Description: NF12459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12459_low_14
NF12459_low_14
[»] chr1 (14 HSPs)
chr1 (15-242)||(16122556-16122783)
chr1 (55-242)||(17116056-17116243)
chr1 (55-239)||(4973212-4973398)
chr1 (42-210)||(50726458-50726626)
chr1 (62-235)||(40693745-40693918)
chr1 (113-233)||(10443401-10443520)
chr1 (101-235)||(31513752-31513886)
chr1 (103-239)||(14286875-14287011)
chr1 (156-232)||(40032556-40032632)
chr1 (54-128)||(11767887-11767961)
chr1 (47-93)||(22791357-22791403)
chr1 (113-199)||(50709423-50709509)
chr1 (187-235)||(270874-270922)
chr1 (52-88)||(17936471-17936507)
[»] chr6 (8 HSPs)
chr6 (98-242)||(8485794-8485938)
chr6 (54-242)||(2988255-2988443)
chr6 (42-235)||(2032491-2032684)
chr6 (101-190)||(688259-688348)
chr6 (156-233)||(12312160-12312236)
chr6 (42-89)||(10229251-10229298)
chr6 (165-239)||(32340406-32340479)
chr6 (113-201)||(17533559-17533647)
[»] chr2 (12 HSPs)
chr2 (54-239)||(38221744-38221929)
chr2 (48-242)||(26352394-26352588)
chr2 (55-242)||(40498389-40498576)
chr2 (155-239)||(17328615-17328699)
chr2 (62-235)||(36467024-36467196)
chr2 (42-190)||(42794921-42795069)
chr2 (80-242)||(11562850-11563010)
chr2 (83-196)||(30382964-30383077)
chr2 (53-89)||(41323719-41323755)
chr2 (42-196)||(14749364-14749518)
chr2 (47-117)||(35298246-35298316)
chr2 (182-242)||(35298370-35298430)
[»] chr8 (11 HSPs)
chr8 (51-235)||(11789508-11789692)
chr8 (50-240)||(11755797-11755987)
chr8 (135-242)||(18320613-18320720)
chr8 (42-233)||(9409727-9409918)
chr8 (41-133)||(24728766-24728858)
chr8 (103-239)||(25429878-25430014)
chr8 (101-242)||(17749026-17749167)
chr8 (165-240)||(18928690-18928765)
chr8 (113-239)||(13003232-13003357)
chr8 (79-196)||(14179887-14180002)
chr8 (113-239)||(24888899-24889025)
[»] chr7 (17 HSPs)
chr7 (103-242)||(34471617-34471756)
chr7 (53-139)||(25311291-25311377)
chr7 (148-239)||(2185868-2185959)
chr7 (51-242)||(48152834-48153026)
chr7 (97-240)||(3751625-3751768)
chr7 (53-196)||(9229518-9229661)
chr7 (97-235)||(48138349-48138487)
chr7 (52-232)||(42040595-42040775)
chr7 (113-235)||(43495888-43496009)
chr7 (113-242)||(45648351-45648480)
chr7 (101-234)||(47843902-47844035)
chr7 (156-240)||(22543489-22543573)
chr7 (101-196)||(45804788-45804884)
chr7 (113-196)||(24699709-24699792)
chr7 (156-239)||(45492067-45492150)
chr7 (52-116)||(5474841-5474905)
chr7 (165-201)||(24911733-24911769)
[»] chr5 (9 HSPs)
chr5 (42-239)||(7056899-7057095)
chr5 (42-235)||(29231212-29231405)
chr5 (50-125)||(8229134-8229209)
chr5 (114-238)||(31114128-31114252)
chr5 (101-242)||(3387135-3387276)
chr5 (51-233)||(27925149-27925332)
chr5 (101-242)||(19100160-19100301)
chr5 (156-208)||(14202899-14202951)
chr5 (103-235)||(34764724-34764856)
[»] chr4 (12 HSPs)
chr4 (52-235)||(2295180-2295363)
chr4 (103-236)||(47923080-47923213)
chr4 (55-207)||(4214094-4214241)
chr4 (182-240)||(7208631-7208689)
chr4 (168-233)||(35823723-35823788)
chr4 (53-133)||(38948698-38948778)
chr4 (42-106)||(40216791-40216855)
chr4 (55-106)||(53586219-53586270)
chr4 (166-240)||(1052289-1052363)
chr4 (156-242)||(19721834-19721920)
chr4 (97-190)||(45773863-45773956)
chr4 (121-201)||(6255272-6255352)
[»] scaffold0565 (1 HSPs)
scaffold0565 (54-235)||(7710-7891)
[»] chr3 (11 HSPs)
chr3 (41-242)||(27164154-27164355)
chr3 (80-196)||(24611635-24611751)
chr3 (156-240)||(20369375-20369459)
chr3 (157-224)||(2118611-2118678)
chr3 (62-237)||(31489658-31489823)
chr3 (183-242)||(39615165-39615224)
chr3 (113-235)||(7629329-7629451)
chr3 (42-196)||(12176659-12176813)
chr3 (52-89)||(17064096-17064133)
chr3 (42-195)||(36172112-36172264)
chr3 (113-233)||(43471643-43471763)
[»] scaffold0495 (1 HSPs)
scaffold0495 (42-89)||(5969-6016)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 16122556 - 16122783
Alignment:
Q  15 gctctaatgtctttgggaatactctccctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16122556 gctctaatgtctttgggaatactctccctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacaga 16122655  T
Q  115 tactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccata 214  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  16122656 tactctcggatacgtatccataaagtgtctgacttaaataatttaatttctaaaaaatattttaccggatacttataagatatttcatagatacatcata 16122755  T
Q  215 atacttataagatacttcacatatacgt 242  Q
    ||||||||||||||||||||||||||||    
T  16122756 atacttataagatacttcacatatacgt 16122783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 17116056 - 17116243
Alignment:
Q  55 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaata 154  Q
    ||||||||||||||| |||||| |||| |||||||||||   ||| ||||||||||| ||||||| ||| ||||||||| |||||| || || |||| ||    
T  17116056 atactccaaaacggagacgtacacgtaccagatacgtatcggataccgatacttcacggatactcgcgggtacgtatccacgaagtatcggaattaatta 17116155  T
Q  155 atttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
     |||||||| ||  |||||||||| | ||||||||   |||| | || |||||||| | ||||||| |||||||||||||||| ||||    
T  17116156 ttttaatttttattaaatattttatcggatacttaggtgatactccacagatacacaagaatacttctaagatacttcacatacacgt 17116243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 4973398 - 4973212
Alignment:
Q  55 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacag--atactctcggatacgtatcctcgaagtgtctgacttaaa 152  Q
    ||||||||||||||| |||||||||||||| |||||||||  ||| |||||  | |||   |||||| |||||||||| || |||| | |  || ||||     
T  4973398 atactccaaaacggagacgtacccgtatcaaatacgtattggataccgatatattacactaatactcgcggatacgtacccacgaaatatgagaattaat 4973299  T
Q  153 taatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatata 239  Q
    || || |||||  ||||||||||||| |||||||||||| |||| | || | |||||| |  ||||||||||||||||| |||||||    
T  4973298 tatttaaattttaaaaaaatattttatcagatacttatatgatactccacaaatacacaaagatacttataagatactttacatata 4973212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 50726458 - 50726626
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||||||||||||| ||| || || ||||||||||||| ||||||||| | ||| ||||| | ||| |||| ||  | |||||||||| ||||||     
T  50726458 ctatgaagtccggatacttcaagacagagacgtacccgtatcggatacgtatcatataccgatattccacggatattcgtgaatacgtatccacgaagta 50726557  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacac 210  Q
    || || |||| || |||||||| ||| |||||||||  | |||||||||  |||| |||| ||||||||    
T  50726558 tcggaattaattattttaatttttaataaatattttttcggatacttatgtgatacttcacagatacac 50726626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 40693745 - 40693918
Alignment:
Q  62 aaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaat 161  Q
    ||||| || ||||||| ||| | |||||||||   ||| ||||||| ||| ||||||| ||||||||||||| |||||| |  || |||| || ||||||    
T  40693745 aaaacagagacgtacctgtaccggatacgtatcggataccgatactccacggatactcgcggatacgtatccacgaagtattggaattaattattttaat 40693844  T
Q  162 ttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 235  Q
    || ||| |||||||||| | ||||| |||  |||| | ||  ||||||| | ||||||| ||||||||||||||    
T  40693845 ttttaataaatattttatcggatacatatgtgatactccacggatacacaagaatacttctaagatacttcaca 40693918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 10443401 - 10443520
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 212  Q
    ||||||| |||||||||| || | |||| || || |||| || |||||||| |||||||||||||| |  ||||||||| |||||||||||||||||| |    
T  10443401 gatactcgcggatacgtacccacaaagtatcggaattaattattttaattt-taaaaaatattttatctaatacttataggatatttcatagatacacga 10443499  T
Q  213 taatacttataagatacttca 233  Q
      ||||||| | |||||||||    
T  10443500 ggatacttacatgatacttca 10443520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 31513886 - 31513752
Alignment:
Q  101 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 200  Q
    |||||||| || ||||||| ||||||| ||||| |||| | || || |||| || |||||||| ||| |||||||||| | |||||||||  |||| | |    
T  31513886 cgatactttacggatactcgcggatacatatccacgaactatcggaattaattattttaatttttaataaatattttatcggatacttatgtgatactcc 31513787  T
Q  201 atagatacaccataatacttataagatacttcaca 235  Q
    | |||||||| |  |||||| ||||||||||||||    
T  31513786 acagatacacaaggatacttctaagatacttcaca 31513752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 14286875 - 14287011
Alignment:
Q  103 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 202  Q
    ||||| ||| ||||||| ||||||| ||  |  ||||| || || |||| || ||||||||  |||| |||| ||| | |||||||||| |||| | |||    
T  14286875 atactccacggatactcgcggatacatactcatgaagtatcggaattaattattttaatttaaaaaatatatattatcggatacttatatgatactccat 14286974  T
Q  203 agatacaccataatacttataagatacttcacatata 239  Q
    |||||||| || |||||||||||||||||| ||||||    
T  14286975 agatacacaatgatacttataagatacttcgcatata 14287011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 40032556 - 40032632
Alignment:
Q  156 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttc 232  Q
    |||||||| |||||||||||||| |||||||||||| |||| | || ||||| || |  |||||| |||||||||||    
T  40032556 tttaatttttaaaaaatattttatcagatacttatatgatactccacagatatacaaggatacttctaagatacttc 40032632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 11767961 - 11767887
Alignment:
Q  54 gatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacg 128  Q
    ||||||| |||||||| ||||||||||||  |||||||||   ||| |||||||| || ||||||| ||||||||    
T  11767961 gatactctaaaacggagacgtacccgtattggatacgtatcggataccgatactttacggatactcgcggatacg 11767887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 22791403 - 22791357
Alignment:
Q  47 aagtccggatactccaaaacggaaacgtacccgtatcagatacgtat 93  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||    
T  22791403 aagtccggatactccaaaatggagacgtacccgtatcatatatgtat 22791357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 50709423 - 50709509
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatattt 199  Q
    |||| |||||||||||||||| || | | || || |||| || ||||||||  || | |||||||| ||||||||||||||||||||    
T  50709423 gatagtctcggatacgtatccacggactatcggaattaattattttaatttaaaatatatattttatcagatacttataagatattt 50709509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 270874 - 270922
Alignment:
Q  187 ttataagatatttcatagatacaccataatacttataagatacttcaca 235  Q
    |||| ||||| ||||||||||||| | ||||||||||||||| ||||||    
T  270874 ttatcagatacttcatagatacacaagaatacttataagatatttcaca 270922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 17936507 - 17936471
Alignment:
Q  52 cggatactccaaaacggaaacgtacccgtatcagata 88  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  17936507 cggatactccaaaatggagacgtacccgtatcagata 17936471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 8485794 - 8485938
Alignment:
Q  98 tatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatat 197  Q
    |||||||||||||| ||||||||  |||||||| || |||||| ||||| ||||||| ||||||||  |||||||||||||    ||||||||||||||     
T  8485794 tatcgatacttcacggatactcttagatacgtacccacgaagtatctgaattaaatattttaattttaaaaaaatattttattgaatacttataagatac 8485893  T
Q  198 ttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
    | ||||||||||| || |||||||||||| |||||||||||||||    
T  8485894 tccatagatacactatgatacttataagacacttcacatatacgt 8485938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 2988443 - 2988255
Alignment:
Q  54 gatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaat 153  Q
    ||||||||||||| || |||||| ||||| |||||||||| | |||  |||||| |||||||| || |||||||| |  | | |||| || || |||| |    
T  2988443 gatactccaaaacagagacgtactcgtattagatacgtatcagatactgatactccacagatagtcacggatacgcacacacaaagtatcagaattaatt 2988344  T
Q  154 aatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
    | || ||||| |||||||||||||| | |||||||||| |||| | |  |||||||| || |||||||||||||| |||||| ||||||    
T  2988343 atttaaatttttaaaaaatattttaacggatacttatacgatactccgcagatacacaatgatacttataagatagttcacaaatacgt 2988255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 2032684 - 2032491
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||| ||||||||| ||||||||| | |||| |||| |  ||||||||   ||| ||||||| ||| ||||||| ||||||||||||| ||||||     
T  2032684 ctatgaagcccggatactacaaaacggagatgtactcgtaccgaatacgtatcggataccgatactccacggatactcgcggatacgtatccacgaagta 2032585  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 235  Q
    || || |||| || |||||||| ||| |||||||||| | |||| ||||  |||| | || | |||||| |  |||||| ||||||||||||||    
T  2032584 tcggaattaattattttaatttttaataaatattttatcggatatttatgtgatactccacatatacacaaggatacttctaagatacttcaca 2032491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 688348 - 688259
Alignment:
Q  101 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttat 190  Q
    ||||||| ||| ||||||| ||||||||||||| |||||| || || |||  || |||||||| ||| |||||||||| |||||||||||    
T  688348 cgatactccacggatactcgcggatacgtatccacgaagtatcagaattatttattttaatttttaataaatattttatcagatacttat 688259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 12312236 - 12312160
Alignment:
Q  156 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttca 233  Q
    |||||||| ||||||||| |||| |  |||||||||||||| | ||||| ||||| || |||||||||||||||||||    
T  12312236 tttaattt-taaaaaataatttatccaatacttataagatactccatagttacacaatgatacttataagatacttca 12312160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 10229251 - 10229298
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatac 89  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  10229251 ctatgaagtctggatacttcaaaacggagacgtacccgtatcagatac 10229298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 32340479 - 32340406
Alignment:
Q  165 taaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatata 239  Q
    |||||||||||||| | |||||||||  ||||||||| ||||||| ||  ||| || ||||||||||||||||||    
T  32340479 taaaaaatattttatcggatacttatgtgatatttcacagataca-caagataattctaagatacttcacatata 32340406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 17533647 - 17533559
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttca 201  Q
    ||||||||| |||||||||||  ||||| || || |||| || ||||||||  || | |||||||| | ||||||||||||||| ||||    
T  17533647 gatactctcagatacgtatccatgaagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagatacttca 17533559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 38221929 - 38221744
Alignment:
Q  54 gatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaat 153  Q
    |||||||||||||||| ||||||||||||| ||||||||||  ||| ||||||| ||| ||||||| |||||||| | || |||||| || || |||| |    
T  38221929 gatactccaaaacggagacgtacccgtatcggatacgtattggataccgatactccacggatactcgcggatacgcacccacgaagtatcggaattaatt 38221830  T
Q  154 aatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatata 239  Q
    | || ||||| |||||||||||||| |  ||||||||| |||| |||  |||||||| |  ||| ||| |||||||||||||||||    
T  38221829 atttaaatttttaaaaaatattttaacgaatacttatacgatacttcgcagatacacaaggatatttacaagatacttcacatata 38221744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 26352394 - 26352588
Alignment:
Q  48 agtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgac 147  Q
    |||||| ||||||||||| ||| | ||||||||||||||||||||| | ||| ||||||||||||||||||| |||||||||| || |  ||| || ||     
T  26352394 agtccgaatactccaaaatggagatgtacccgtatcagatacgtatcagataccgatacttcacagatactcgcggatacgtacccactgagtatcggaa 26352493  T
Q  148 ttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacac-cataatacttataagatacttcacatatacgt 242  Q
    |||| || ||||||||  || | ||||||||   ||||||||||||||| |  ||| |||||| ||| ||||||||||||||||||||||| ||||    
T  26352494 ttaattattttaatttaaaatatatattttattggatacttataagatactcgataaatacacacat-atacttataagatacttcacataaacgt 26352588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 40498389 - 40498576
Alignment:
Q  55 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaata 154  Q
    ||||| ||||||||| || || ||||||  |||||| ||   ||| ||||||| |||||||||||  ||||||| | || |||||| ||  |||||| ||    
T  40498389 atactacaaaacggagacatatccgtattggatacgaatcggataccgatactccacagatactcgtggatacgcacccacgaagtatcgaacttaatta 40498488  T
Q  155 atttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
     || ||||| |||||||||||||| | ||||||||||||||| | | ||||||||| |  ||| ||||||||||||||| ||||||||    
T  40498489 tttaaatttttaaaaaatattttaacggatacttataagatactccgtagatacacaaggatatttataagatacttcatatatacgt 40498576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 17328615 - 17328699
Alignment:
Q  155 atttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatata 239  Q
    |||||||||  ||||||||| ||| | |||||||||| |||| | ||||||||||| || |||||||||||||||||||||||||    
T  17328615 atttaatttaaaaaaaatatattatcggatacttatatgatactccatagatacacaatgatacttataagatacttcacatata 17328699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 36467024 - 36467196
Alignment:
Q  62 aaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaat 161  Q
    |||||||| |||||||| |||| |||| ||||   ||| ||||||| ||||||||||   | |||||||  | |||||| || || |||| || ||||||    
T  36467024 aaaacggagacgtacccatatcggatatgtatcggataccgatactccacagatacttgtgaatacgtactcacgaagtatcggaattaattattttaat 36467123  T
Q  162 ttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 235  Q
    ||  ||||||||||||| | |||||||||| |||| | || |||||||| |  |||||||||||||||||||||    
T  36467124 tta-aaaaaatattttatctgatacttataggataatccacagatacacaaagatacttataagatacttcaca 36467196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 42795069 - 42794921
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||| ||| ||||||||||||||| |||||||| ||   |||||||||  |||| ||||||| ||| ||||||| |||||||||||||  |||||     
T  42795069 ctatgaagcccgaatactccaaaacggagacgtacccatactggatacgtatggaataccgatactccacggatactcgcggatacgtatccatgaagta 42794970  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttat 190  Q
    || || || | || |||||||| ||| ||| |||||| | |||||||||    
T  42794969 tcagaattgattattttaatttttaataaacattttatcggatacttat 42794921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 242
Target Start/End: Complemental strand, 11563010 - 11562850
Alignment:
Q  80 tatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttac 179  Q
    |||| ||||| ||| | ||| ||||||||||| ||||||| ||||||||||||| ||||||  | || ||||  | |||||||| | ||||||||||||     
T  11563010 tatcggatacatatcagataccgatacttcacggatactcgcggatacgtatccacgaagtaccgga-ttaataattttaattttttaaaaatattttat 11562912  T
Q  180 cagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
    | |||||||||  ||||   | || |||||| | |||||||||||||||||||||| ||||||    
T  11562911 ctgatacttat-ggataccccgtaaatacacaaaaatacttataagatacttcacaaatacgt 11562850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 30383077 - 30382964
Alignment:
Q  83 cagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccag 182  Q
    ||||||||||||  |||  |||||| |||  |||||| |||||||||| || |||||| || || |||| || |||||||| |||||||||||||| | |    
T  30383077 cagatacgtattggatacagatactccacgaatactcgcggatacgtacccacgaagtatcggagttaattattttaatttttaaaaaatattttatcgg 30382978  T
Q  183 atacttataagata 196  Q
    |||| |||| ||||    
T  30382977 atacatatatgata 30382964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 41323719 - 41323755
Alignment:
Q  53 ggatactccaaaacggaaacgtacccgtatcagatac 89  Q
    ||||||||||||||||| |||||||||||||||||||    
T  41323719 ggatactccaaaacggacacgtacccgtatcagatac 41323755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 14749364 - 14749518
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||| |||||||| |||||| ||| ||||||| |||   |||||||||   ||  ||||||| | | |||||||||||||||||| || || |||     
T  14749364 ctatgaagcccggataccccaaaatggagacgtacctgtactggatacgtatcggattccgatactccgcggatactctcggatacgtacccacggagta 14749463  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 196  Q
    || || |||| || ||||||||  || | |||||||| | |||||||||||||||    
T  14749464 tcagaattaattattttaatttaaaatatatattttatcggatacttataagata 14749518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 35298246 - 35298316
Alignment:
Q  47 aagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatac 117  Q
    ||||||||||||||||||||  | ||||||| ||||| |||||||||   ||| ||||||| |||||||||    
T  35298246 aagtccggatactccaaaacaaagacgtacctgtatcggatacgtatcggataccgatactccacagatac 35298316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 35298370 - 35298430
Alignment:
Q  182 gatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
    |||||||||| |||| | || |||||||| |  ||| ||||||||||||||||||||||||    
T  35298370 gatacttatatgatactccacagatacacaaagatatttataagatacttcacatatacgt 35298430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 11789692 - 11789508
Alignment:
Q  51 ccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgactta 150  Q
    ||||||||||||||||||| |||| |||||| ||||||||||| | ||| ||||||| ||| ||||||| ||||||||||||| |||||| || || |||    
T  11789692 ccggatactccaaaacggagacgtgcccgtaccagatacgtatcagataccgatactccacggatactcgcggatacgtatccacgaagtatcagaatta 11789593  T
Q  151 aataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 235  Q
    | || |||||||| ||| |||||||||| | ||||||| |  |||| | || | |||||| || ||||||  |||||||||||||    
T  11789592 attattttaatttttaataaatattttatcggatacttgtgtgatactccacaaatacacaatgatacttccaagatacttcaca 11789508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 11755987 - 11755797
Alignment:
Q  50 tccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgactt 149  Q
    |||||||||| ||||||||| || || ||||||  ||||  ||||  |||  ||||||| || |||||||| |||||||||| | |||||| |   | ||    
T  11755987 tccggatacttcaaaacggagacatatccgtattggatatatattggatactgatactttacggatactcttggatacgtattcacgaagtattataatt 11755888  T
Q  150 aaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 240  Q
    ||||| |||||||| |||||||||||||| | |||||||||||||||||  | ||||| ||||  ||||||||||||||||||||||||||    
T  11755887 aaatattttaatttttaaaaaatattttatcggatacttataagatattctacagatagaccaggatacttataagatacttcacatatac 11755797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 18320613 - 18320720
Alignment:
Q  135 cgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcac 234  Q
    |||||| ||||| ||||||| |||||||  ||||||| |||||| |||||| |||||| ||| |||||||||| | ||  ||||||||||||||||||||    
T  18320613 cgaagtatctgaattaaatattttaattcttaaaaaacattttatcagatagttataaaatacttcatagatatatcaggatacttataagatacttcac 18320712  T
Q  235 atatacgt 242  Q
    ||||||||    
T  18320713 atatacgt 18320720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 9409727 - 9409918
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||| ||||||| |||||||| || ||||||||||| |  ||||||||   ||| ||||||| ||| ||||||| ||||||||||||| ||||||     
T  9409727 ctatgaagcccggatattccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccacggatactcacggatacgtatccacgaagta 9409826  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttca 233  Q
    ||  | |||| || |||||||| ||| |||||| ||| | |||||||||  |||| | || |||||||| |  |||||| ||||||||||||    
T  9409827 tcataattaattattttaatttttaataaatatgttatcggatacttatgggatactccacagatacacaaggatacttctaagatacttca 9409918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 24728858 - 24728766
Alignment:
Q  41 cctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcc 133  Q
    ||||| ||| ||||||||||||||||||| |||||| |||||| ||||||||| | ||| | ||||| ||| ||||||| |||||||||||||    
T  24728858 cctatgaagcccggatactccaaaacggagacgtactcgtatcggatacgtatcagataccaatactccacggatactcgcggatacgtatcc 24728766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 25429878 - 25430014
Alignment:
Q  103 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 202  Q
    ||||| ||| ||||||| |||||||||| ||  ||||| || || |||| || |||||||| |||||||||| |||   |||||||||| |||| | ||     
T  25429878 atactccacggatactcgcggatacgtacccatgaagtatcagaattaattattttaatttttaaaaaatatattaatggatacttatatgataatccac 25429977  T
Q  203 agatacaccataatacttataagatacttcacatata 239  Q
    |||||||| |  |||||||||||||||||| ||||||    
T  25429978 agatacacaaggatacttataagatacttcgcatata 25430014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 17749167 - 17749026
Alignment:
Q  101 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 200  Q
    ||||||| |||||||| |  |||||||| | || ||||||  | || |||| || || ||||| |||||||||||||| | |||||||||| |||| |||    
T  17749167 cgatactccacagatatttgcggatacgcacccacgaagtaacagaattaattatttaaatttttaaaaaatattttaacggatacttatacgatacttc 17749068  T
Q  201 atagatacaccataatacttataagatacttcacatatacgt 242  Q
      ||||||||    ||||||||||||||||||||| ||||||    
T  17749067 gcagatacacatggatacttataagatacttcacaaatacgt 17749026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 18928765 - 18928690
Alignment:
Q  165 taaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 240  Q
    |||||||||||||  | |||||||||| |||| | || | |||||| || ||||||||||||||||| ||||||||    
T  18928765 taaaaaatattttgtcggatacttatatgatactccacatatacacaatgatacttataagatactttacatatac 18928690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 13003232 - 13003357
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 212  Q
    ||||||| |||||||||| || | |||| ||  | |||| || |||||||| |||||||||||||| |  ||||||||| |||| | ||||||| ||| |    
T  13003232 gatactcgcggatacgtacccacaaagtatcataattaattattttaattt-taaaaaatattttatctaatacttatatgatactccatagattcacaa 13003330  T
Q  213 taatacttataagatacttcacatata 239  Q
      ||||||| |||||| ||||||||||    
T  13003331 agatacttacaagatatttcacatata 13003357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 14179887 - 14180002
Alignment:
Q  79 gtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatatttta 178  Q
    ||||||||||||||||| ||| ||||||| |||| |||||  |||||| |||||| |||| | |  ||  ||| || |||||||||  ||| ||||||||    
T  14179887 gtatcagatacgtattagataccgatactccacatatacttgcggatatgtatccacgaaatattggaaataattattttaatttc--aaatatatttta 14179984  T
Q  179 ccagatacttataagata 196  Q
     | |||||||||||||||    
T  14179985 tcggatacttataagata 14180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 24889025 - 24888899
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 212  Q
    ||||||| |||||||||| ||  ||||| || || |||| || |||||||| |||||||||| |||   |||||||||| |||| | || | ||| || |    
T  24889025 gatactcgcggatacgtacccatgaagtatcagaattaattattttaatttttaaaaaatatattattggatacttatatgatactccacaaatagacaa 24888926  T
Q  213 taatacttataagatacttcacatata 239  Q
      |||||||||||||||||| ||||||    
T  24888925 ggatacttataagatacttcgcatata 24888899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 34471617 - 34471756
Alignment:
Q  103 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 202  Q
    ||||| ||||||||||| || ||| ||| || |||||| || || |||| || ||||||||  ||||||||||||| | |||||||||| |||| |||||    
T  34471617 atactccacagatactcacgaatatgtacccacgaagtatcagaattaattattttaattttaaaaaaatattttatctgatacttataggatacttcat 34471716  T
Q  203 agatacaccataatacttataagatacttcacatatacgt 242  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  34471717 agatacacaagaatacttataagatacttcacatatacgt 34471756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 25311377 - 25311291
Alignment:
Q  53 ggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaag 139  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||| |||  |||||| |||| |||||| ||||||||||||| |||||    
T  25311377 ggatactccaaaacggagacgtacccgtatcggatacatattagatactgatactccacaaatactcgcggatacgtatccacgaag 25311291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 2185959 - 2185868
Alignment:
Q  148 ttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatata 239  Q
    |||| ||||||||||| |||||||||| ||| | |||||||||| |||| | |||| |||||| |  |||||||||||||||||||||||||    
T  2185959 ttaattaatttaatttttaaaaaatatattatcggatacttatatgatactccatatatacacaaggatacttataagatacttcacatata 2185868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 242
Target Start/End: Original strand, 48152834 - 48153026
Alignment:
Q  51 ccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgactta 150  Q
    ||||||||||||||||||| ||||| | ||||| ||||||||||  |||  |||||| ||| ||||||| |||| ||| | || |||||| || || |||    
T  48152834 ccggatactccaaaacggagacgtatctgtatcggatacgtattggatactgatactccacggatactcgcggacacgcacccacgaagtatcagaatta 48152933  T
Q  151 aataatttaatttctaaaaaat-attttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
    | || || ||||| |||||||  |||| | | |||||||||| |||| |    |||||||| |  |||||||||||||| |||||||||||||    
T  48152934 attatttaaatttttaaaaaaacatttaaacggatacttatacgatactctgcagatacacaaggatacttataagatatttcacatatacgt 48153026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 3751768 - 3751625
Alignment:
Q  97 atatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 196  Q
    ||||||||||| ||| |||| ||  ||||||||| || ||| || || || |||| || || ||||  |||||| ||||||| |||||||||||| | ||    
T  3751768 atatcgatactccacggatattcgtggatacgtacccacgacgtatcggagttaattatttcaattgttaaaaattattttatcagatacttatatgtta 3751669  T
Q  197 tttcatagatacaccataatacttataagatacttcacatatac 240  Q
     | || |||||||| | ||||||| |||||||||||||||||||    
T  3751668 ctgcagagatacacaaaaatacttttaagatacttcacatatac 3751625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 9229661 - 9229518
Alignment:
Q  53 ggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaa 152  Q
    |||||| |||||| ||| |||||||||||   ||||||||||  || |||||||| | |||||||||||||||||||| || || ||| || || ||||     
T  9229661 ggataccccaaaatggagacgtacccgtactggatacgtattggatttcgatactccgcagatactctcggatacgtacccacggagtatcagaattaat 9229562  T
Q  153 taatttaatttctaaaaaatattttaccagatacttataagata 196  Q
    || ||||||||  || | ||||||||   |||||||||||||||    
T  9229561 tattttaatttaaaatatatattttattggatacttataagata 9229518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 235
Target Start/End: Original strand, 48138349 - 48138487
Alignment:
Q  97 atatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 196  Q
    ||||||||| | ||| |||||||||||||||||| |  |||| | || || |||| || ||||||||  || | |||||||| | |||||||||||||||    
T  48138349 atatcgataatccacggatactctcggatacgtacctacgaaatatcggaattaattattttaatttaaaatatatattttatcggatacttataagata 48138448  T
Q  197 tttcatagatacaccataatacttataagatacttcaca 235  Q
     |  | ||||||||   ||||||||||||||||||||||    
T  48138449 ctcgacagatacacacaaatacttataagatacttcaca 48138487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 42040775 - 42040595
Alignment:
Q  52 cggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaa 151  Q
    |||||||||||||||||| |||||| |||| | ||||||||| | ||| ||||||| ||| ||||||   |||||||||| | |||||| ||  | ||      
T  42040775 cggatactccaaaacggagacgtactcgtaccggatacgtatcagataccgatactccacggatacttgtggatacgtattcacgaagtatcataattgg 42040676  T
Q  152 ataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttc 232  Q
     || |||||||| ||| |||||||||| | |||||||||  |||| |  | |||||||| |  |||||| |||||||||||    
T  42040675 ttattttaatttttaataaatattttatcggatacttatgggatactctacagatacacaaggatacttctaagatacttc 42040595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 43496009 - 43495888
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 212  Q
    ||||||| |||||||| | |  |||||| || || |||| || || |||||  ||||||||||||| | |||||||||| |||| |   ||||||||| |    
T  43496009 gatactcgcggatacgcacctacgaagtatccgaattaattatttaaatttaaaaaaaatattttaacggatacttatacgatactctgtagatacac-a 43495911  T
Q  213 taatacttataagatacttcaca 235  Q
    |||||||||||||||||||||||    
T  43495910 taatacttataagatacttcaca 43495888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 242
Target Start/End: Complemental strand, 45648480 - 45648351
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 212  Q
    ||||||| |||||||||| || |||||| || || |||| || |||||||| ||| |||||||||| | | |||||||  |||| | || |||||||  |    
T  45648480 gatactcgcggatacgtacccacgaagtatcggaattaattattttaatttttaataaatattttatcgggtacttatgtgatactccacagatacataa 45648381  T
Q  213 taatacttataagatacttcacatatacgt 242  Q
      |||||| |||||||||||||| ||||||    
T  45648380 ggatacttctaagatacttcacagatacgt 45648351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 47844035 - 47843902
Alignment:
Q  101 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 200  Q
    ||||||| ||| ||||||| |||||||||| || |||||| ||| | |||| || ||| |||| | |||||||||||| | |||||||||| |||| | |    
T  47844035 cgatactccacggatactcgcggatacgtacccacgaagtatctcaattaattattttgattttttaaaaatattttatcggatacttatatgatactcc 47843936  T
Q  201 atagatacaccataatacttataagatacttcac 234  Q
      ||||| || |  |||||| |||||||||||||    
T  47843935 gcagatagacaaggatacttctaagatacttcac 47843902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 22543573 - 22543489
Alignment:
Q  156 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 240  Q
    |||||||| |||||||||||||| | |||||||||| |||| |  | | |||||| | ||||||  |||||||||||||||||||    
T  22543573 tttaatttttaaaaaatattttatcggatacttatatgatactctacatatacacaaaaatactcttaagatacttcacatatac 22543489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 45804788 - 45804884
Alignment:
Q  101 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttct-aaaaaatattttaccagatacttataagata 196  Q
    ||||||||||| |||| ||  |||||||||| | |||||| || || |||| || |||||||| | ||||||||||||| ||||||| |||||||||    
T  45804788 cgatacttcacggatattcgaggatacgtattcacgaagtatcggaattaattattttaattttttaaaaaatattttatcagatacatataagata 45804884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 24699709 - 24699792
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 196  Q
    ||||||||||||||||||||| || ||| || || |||| || ||||||||  || | |||||||| | |||||||||||||||    
T  24699709 gatactctcggatacgtatccacggagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagata 24699792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 45492067 - 45492150
Alignment:
Q  156 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatata 239  Q
    ||||||||  |||| |||| ||| | |||||||||| |||| | ||||| ||||| || |||||||||||||||||| ||||||    
T  45492067 tttaatttaaaaaatatatattatcggatacttatatgatactccataggtacacaatgatacttataagatacttcgcatata 45492150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 5474905 - 5474841
Alignment:
Q  52 cggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagata 116  Q
    |||||| ||||||||||| |||||||| |||| |||| |||||  ||||||||||| ||| ||||    
T  5474905 cggatattccaaaacggagacgtacccatatcggatatgtattggatatcgatactccacggata 5474841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 24911733 - 24911769
Alignment:
Q  165 taaaaaatattttaccagatacttataagatatttca 201  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  24911733 taaaaaatattttaccaaatacttataagataattca 24911769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 7056899 - 7057095
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||   ||| |||||||  || |||||||  | ||||||| || ||||||     
T  7056899 ctatgaagtctggatactccaaaacggagacgtacctgtatcagataagtatcggataccgatactctacggatactcgtgaatacgtacccacgaagta 7056998  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatata 239  Q
    ||  | |||| || |||||||| |||||||||||||| | |||||||||| |||| | ||||||||||| |  ||||||||||||| |||||||||||    
T  7056999 tcgaaattaa-tattttaatttttaaaaaatattttatctgatacttataggatactccatagatacacaaggatacttataagatgcttcacatata 7057095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 29231405 - 29231212
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||||||||||||||||||||||| | || |||||| | |||||||||   ||| ||||||| ||| |||| || | |||||||||||  |||||     
T  29231405 ctatgaagtccggatactccaaaacggagatgtgcccgtaccggatacgtatcggataccgatactccacggatattcgcagatacgtatccaagaagta 29231306  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 235  Q
    || || |||| || |||||||| ||| |||||||||| | |||||||||  |||| | || | |||||| |  ||| || ||||||||||||||    
T  29231305 tcggaattaattattttaatttttaataaatattttatcggatacttatgtgatactccacatatacacaaggatatttttaagatacttcaca 29231212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 8229134 - 8229209
Alignment:
Q  50 tccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggat 125  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||| | ||| ||||||| ||| ||||||| |||||    
T  8229134 tccggataccccaaaacggagacgtacccgtatcggatacgtatcagataccgatactccacggatactcgcggat 8229209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 31114252 - 31114128
Alignment:
Q  114 atactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccat 213  Q
    |||||| ||||| |||||||   |||| || || |||| || |||||||| |||||||||| ||| ||||||||||||  ||| |||| | ||||||  |    
T  31114252 atactcgcggatgcgtatccataaagtatcagaattaattattttaatttttaaaaaatatattatcagatacttatataatacttcaaaaatacacatt 31114153  T
Q  214 aatacttataagatacttcacatat 238  Q
     |||||||||||||||||| |||||    
T  31114152 gatacttataagatacttcgcatat 31114128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 3387135 - 3387276
Alignment:
Q  101 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 200  Q
    ||||||| || ||||| || ||||||| || || |||||| ||  | |||| || |||||||| | ||||||| |||| || |||| ||||||||| |||    
T  3387135 cgatactccaaagatattcgcggatacatacccacgaagtatcaaaattaattattttaatttttgaaaaataatttatcaaatacatataagatacttc 3387234  T
Q  201 atagatacaccataatacttataagatacttcacatatacgt 242  Q
    |  ||||||| | |||||||||||||| |||| || ||||||    
T  3387235 acggatacacaaaaatacttataagatgcttcgcaaatacgt 3387276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 233
Target Start/End: Original strand, 27925149 - 27925332
Alignment:
Q  51 ccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgactta 150  Q
    |||||||||||||||| || |||||| |||||| ||||||||| | ||| |||| || ||| |||| || |||||| ||| |   ||||| || || |||    
T  27925149 ccggatactccaaaacagagacgtactcgtatcggatacgtatcagataccgatcctccactgatattcgcggatatgtacctatgaagtatcggagtta 27925248  T
Q  151 aataatttaatttctaaaaa-atattttaccagatacttataagatatttcatagatacaccataatacttataagatacttca 233  Q
    | || ||||||||  ||||| |||||||||  |||||||| | |||| | || |||||||| |  ||||||| | |||||||||    
T  27925249 attattttaatttaaaaaaatatattttacatgatacttaaatgatactgcacagatacacaaggatacttacatgatacttca 27925332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 19100301 - 19100160
Alignment:
Q  101 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 200  Q
    ||||||||||| ||||||| |||||| ||| |  |||||| |   | |||| || |||||||| ||| |||||||||| | |||||||||  |||| | |    
T  19100301 cgatacttcacggatactcgcggatatgtacctacgaagtattgaaattaattattttaatttttaataaatattttatcggatacttatgtgatactcc 19100202  T
Q  201 atagatacaccataatacttataagatacttcacatatacgt 242  Q
    | | |||||| |  |||||| |||||||||||||| ||||||    
T  19100201 acatatacacaaggatacttctaagatacttcacagatacgt 19100160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 14202951 - 14202899
Alignment:
Q  156 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatac 208  Q
    |||||||| |||||||| ||| | | |||||||||||||||||||||| ||||    
T  14202951 tttaatttttaaaaaatctttcatcggatacttataagatatttcataaatac 14202899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 34764856 - 34764724
Alignment:
Q  103 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 202  Q
    ||||| ||| ||||||| |||||||| | || |||||| || || |||| || || |||||  ||||||||||||| |  ||||||||| |||| | ||     
T  34764856 atactccacggatactcgcggatacgcacccacgaagtatcagaattaattatttaaattttaaaaaaatattttatcgaatacttatatgatactccac 34764757  T
Q  203 agatacaccataatacttataagatacttcaca 235  Q
    | |||||| |  ||||||||||| |||||||||    
T  34764756 aaatacacaaggatacttataaggtacttcaca 34764724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 235
Target Start/End: Original strand, 2295180 - 2295363
Alignment:
Q  52 cggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaa 151  Q
    ||||||||| ||||| || ||||||||||| | ||||||| |   ||| ||||||| ||  ||||||| ||||||||||||| |||||| || || ||||    
T  2295180 cggatactcaaaaacagagacgtacccgtaccggatacgtgtcggataccgatactccaaggatactcgcggatacgtatccacgaagtatcggaattaa 2295279  T
Q  152 ataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 235  Q
     || |||||||| ||| |||||||||| |||||| ||||  |||||| || |||||||| || |||||| ||||||||||||||    
T  2295280 ttattttaatttttaataaatattttatcagatatttatgggatattccacagatacacaatgatacttctaagatacttcaca 2295363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 47923213 - 47923080
Alignment:
Q  103 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 202  Q
    ||||||||| ||||||| | |||||||| || || ||| ||  | |||| || ||||||||  ||||||||||||| | |||||||||| |||||||||     
T  47923213 atacttcacggatactcgcagatacgtacccacggagtatcataattaattattttaattttaaaaaaatattttatcggatacttatatgatatttcac 47923114  T
Q  203 agatacaccataatacttataagatacttcacat 236  Q
    |||||||| || |||||| |||||||||||||||    
T  47923113 agatacacaatgatacttctaagatacttcacat 47923080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 4214241 - 4214094
Alignment:
Q  55 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaata 154  Q
    |||||||||||  || ||||| |||||| ||||||||||     | ||||||||||| | ||||| | |||||||| || ||||||  | || |||| ||    
T  4214241 atactccaaaatagagacgtatccgtattagatacgtat-----accgatacttcacgggtactcgcagatacgtacccacgaagtaccagaattaatta 4214147  T
Q  155 atttaatttctaaaaaatattttaccagatacttataagatatttcatagata 207  Q
     |||||||| |||||||||||||| | |||||||||| |||| ||||||||||    
T  4214146 ttttaatttttaaaaaatattttatctgatacttatatgatacttcatagata 4214094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 7208689 - 7208631
Alignment:
Q  182 gatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 240  Q
    |||||||||| ||||||||| | |||||| |||||||||||||||||||||||| ||||    
T  7208689 gatacttatatgatatttcacatatacacaataatacttataagatacttcacagatac 7208631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 35823788 - 35823723
Alignment:
Q  168 aaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttca 233  Q
    |||||| |||| | ||||||||||||||| ||||||||||| | |  |||||||||||||||||||    
T  35823788 aaaataatttatctgatacttataagatacttcatagatacccaaagatacttataagatacttca 35823723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 38948778 - 38948698
Alignment:
Q  53 ggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcc 133  Q
    ||||||||||||| ||| ||||| ||||||  |||||||||   ||| ||||||| ||| ||||||||||||||| |||||    
T  38948778 ggatactccaaaatggagacgtatccgtattggatacgtatcggataccgatactccacggatactctcggatacatatcc 38948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 40216791 - 40216855
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatac 106  Q
    |||| |||||||||||||||||||| ||||| |||||||||| |||| ||||   ||||||||||    
T  40216791 ctatgaagtccggatactccaaaacagaaacatacccgtatcggatatgtatcggatatcgatac 40216855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 53586219 - 53586270
Alignment:
Q  55 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatac 106  Q
    ||||||||||||||  |||||||||||||||||||||||  |||| ||||||    
T  53586219 atactccaaaacggtgacgtacccgtatcagatacgtatcgaataccgatac 53586270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 1052289 - 1052363
Alignment:
Q  166 aaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 240  Q
    ||||||||| ||| | |||| ||||| |||| | |  |||||||| || ||||||||||||||||||||||||||    
T  1052289 aaaaaatatattaacggatatttatacgatactccgcagatacacaatgatacttataagatacttcacatatac 1052363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 19721920 - 19721834
Alignment:
Q  156 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
    |||||||| ||| |||||||||| | |||||||||  |||| | || |||||||| || ||| || |||||||||||||||| ||||    
T  19721920 tttaatttttaataaatattttatcggatacttatgtgatactccacagatacacaatgatatttctaagatacttcacatacacgt 19721834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 45773863 - 45773956
Alignment:
Q  97 atatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttat 190  Q
    ||||||||||||||| ||||||  ||||||||||||   ||||| ||  | |||| || |||||||| ||| |||||||||| | |||||||||    
T  45773863 atatcgatacttcacggatacttgcggatacgtatctatgaagtatcgaaattaattattttaatttttaataaatattttatcggatacttat 45773956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 6255272 - 6255352
Alignment:
Q  121 cggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttca 201  Q
    ||||||||||||| || ||| || || |||| || ||||||||  || | || ||||||| ||||||||||||||||||||    
T  6255272 cggatacgtatccacggagtatcagaattaattattttaattttaaatatattttttaccggatacttataagatatttca 6255352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 7710 - 7891
Alignment:
Q  54 gatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaat 153  Q
    |||||| ||||||||| ||||| ||||||| ||||||||| | ||| |||||||  || ||||||| ||||||||||||| |||||| || || |||| |    
T  7710 gatacttcaaaacggagacgtatccgtatcggatacgtatcagataccgatactctacggatactcgcggatacgtatccacgaagtatcggaattaatt 7809  T
Q  154 aatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 235  Q
    | |||||||| ||| |||||||||| |  ||||||||  |||| | || |||||||| |  |||||| ||||||||||||||    
T  7810 attttaatttttaataaatattttatcgaatacttatgtgatactccacagatacacaaggatacttctaagatacttcaca 7891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 242
Target Start/End: Complemental strand, 27164355 - 27164154
Alignment:
Q  41 cctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagt 140  Q
    ||||| ||||| ||||||| |||||  || |||||||||||||||||| |||||  |||| || |||| || |||| ||  |||||||||    | ||||    
T  27164355 cctatgaagtctggatacttcaaaatagagacgtacccgtatcagatatgtatttgatattgacactttacggatattcgtggatacgtacttacaaagt 27164256  T
Q  141 gtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 240  Q
     || || |||| || ||  |||| ||||| |||||||| | |||||||||  |||| | ||||||||||| |  ||||||||||||||||||||||||||    
T  27164255 atcggaattaattatttacatttttaaaatatattttatctgatacttattggatactccatagatacacaaggatacttataagatacttcacatatac 27164156  T
Q  241 gt 242  Q
    ||    
T  27164155 gt 27164154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 24611751 - 24611635
Alignment:
Q  80 tatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttac 179  Q
    |||||||||||||||  ||| ||||||| |||| |||||| ||||||||||| | || ||| || || |||| || ||||||||  || | ||||||||     
T  24611751 tatcagatacgtattggataccgatactccacatatactcgcggatacgtattcacggagtatcagaattaattattttaatttaaaatacatattttat 24611652  T
Q  180 cagatacttataagata 196  Q
    | |||||||||||||||    
T  24611651 cggatacttataagata 24611635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 20369459 - 20369375
Alignment:
Q  156 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 240  Q
    |||| ||| |||||||||||||| | ||||||| || | || |||| |||||||| |  |||||||||||||| |||||||||||    
T  20369459 tttattttttaaaaaatattttatccgatacttttagggtacttcacagatacacaaggatacttataagatatttcacatatac 20369375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 2118611 - 2118678
Alignment:
Q  157 ttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataa 224  Q
    ||||||| |||||||||| ||| |||||||||||| |||| || | |||||||| | |||||||||||    
T  2118611 ttaatttttaaaaaatatcttatcagatacttataggatactttagagatacacaagaatacttataa 2118678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 31489823 - 31489658
Alignment:
Q  62 aaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaat 161  Q
    |||| ||| |||||||||||| |||||||||| | ||| | ||| ||||  ||||||||||||||||||  |||||| |        ||| || ||||||    
T  31489823 aaaatggagacgtacccgtattagatacgtatcagataccaatatttcatggatactctcggatacgta--ctcgaaat--------taattattttaat 31489734  T
Q  162 ttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacata 237  Q
    ||  || | |||||||| || ||||||||||||||||| | ||||||||   ||||||| |||||||| |||||||    
T  31489733 ttaaaatatatattttatcatatacttataagatattttacagatacacacaaatacttgtaagatacgtcacata 31489658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 39615224 - 39615165
Alignment:
Q  183 atacttataagatatttcatagatacaccataatacttataagatacttcacatatacgt 242  Q
    |||||| ||||||| | || |||||||| || ||||||||||||||||||||| ||||||    
T  39615224 atacttgtaagatactccacagatacacaatgatacttataagatacttcacaaatacgt 39615165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 7629451 - 7629329
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 212  Q
    ||||||| | ||||||||||| |||||| || || |||| || |||||||| ||| |||||||||| | ||||||| |  |||| | || | |||||| |    
T  7629451 gatactcgcagatacgtatccacgaagtatcagaattaattattttaatttttaataaatattttatcggatacttgtgtgatactccacatatacacaa 7629352  T
Q  213 taatacttataagatacttcaca 235  Q
      |||||| ||||||||||||||    
T  7629351 ggatacttctaagatacttcaca 7629329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 12176813 - 12176659
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||| |||||||| |||||| ||| |||||||| ||   ||||||||| | ||   |||||| | | |||||||||||||||||| || || |||     
T  12176813 ctatgaagcccggataccccaaaatggagacgtacccatactggatacgtatcagattctgatactccgcggatactctcggatacgtacccacggagta 12176714  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 196  Q
    || || |||| || ||||||||  || | |||||||| | |||||||||||||||    
T  12176713 tcggaattaattattttaatttaaaatatatattttatcggatacttataagata 12176659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 17064133 - 17064096
Alignment:
Q  52 cggatactccaaaacggaaacgtacccgtatcagatac 89  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  17064133 cggatactccaaaacggagacgtacccgtatcggatac 17064096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 36172264 - 36172112
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 141  Q
    |||| ||| |||||||| |||||| ||| ||||||| |||  ||||||||||   ||| ||||||| |   |||||||||||||||||| || || |||     
T  36172264 ctatgaagcccggatac-ccaaaatggagacgtacctgtactagatacgtatcggataccgatactccgtggatactctcggatacgtacccacggagta 36172166  T
Q  142 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagat 195  Q
    || || |||| || ||||||||  || | |||||||| | ||||||||||||||    
T  36172165 tcagaattaattattttaatttaaaatatatattttatcggatacttataagat 36172112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 43471643 - 43471763
Alignment:
Q  113 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 212  Q
    ||||||||| |||||||| || || ||| || || |||| || ||||||||  || | |||||||| | ||||||||||||||| |  | ||||||||      
T  43471643 gatactctcagatacgtacccacggagtatcagaattaattattttaattttaaatatatattttatcggatacttataagatactcgacagatacacac 43471742  T
Q  213 taatacttataagatacttca 233  Q
      |||||||||||||||||||    
T  43471743 agatacttataagatacttca 43471763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 5969 - 6016
Alignment:
Q  42 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatac 89  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  5969 ctatgaagtctggatacttcaaaacggagacgtacccgtatcagatac 6016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University