View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12459_low_2 (Length: 821)
Name: NF12459_low_2
Description: NF12459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12459_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 20 - 644
Target Start/End: Complemental strand, 5809886 - 5809261
Alignment:
| Q |
20 |
ggtacaaatatgttgttttctagtgatagaattaacataatttgtcttgtcaattttgcttcctcaaacgtttttggttatactgtatagctagcaggtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5809886 |
ggtacaaatatgttgttttctagtgatggaattaacataatttgtctggtcgattttgcttcctcaaacgtttttggttatactgtatagctagcaggtt |
5809787 |
T |
|
| Q |
120 |
gctttttctcttatttataggtgcatgcatattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtg |
219 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5809786 |
gctttttctcttatttataggtgtatgcatattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtg |
5809687 |
T |
|
| Q |
220 |
atttactgaatcgagaagctgatgaccttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagt |
319 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5809686 |
atttactggatcgagaagctgatgatcttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaa-aacgcatttaaaaaagctggagt |
5809588 |
T |
|
| Q |
320 |
gaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccacc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5809587 |
gaatgtggaagctttggaggagcttgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgtagaacttgccttatggtgccacc |
5809488 |
T |
|
| Q |
420 |
gaaaatgaacttgcaaagatttttgggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctcctt |
517 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5809487 |
gaaaatgaacttgcaaagattttggggaaatttggtagtttggataaaataattctcgcctcgacaaaaacattggccttggtatttttcctctctcctt |
5809388 |
T |
|
| Q |
518 |
cttttcatgacatgtctatgtattttctttattttggtgaggtacatatgatagcttattatcacatcttatagccttatagactagttctgttataatc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
5809387 |
cttttcatgacatgtctatgtattttctttattttggtgaggtacatatgatagcttattatcacatcttataggcttatagactacttctgttataatc |
5809288 |
T |
|
| Q |
618 |
tctatttaatttttcattcgtttatgt |
644 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
5809287 |
tctatttaatttttcattcctttatgt |
5809261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-108; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 148 - 543
Target Start/End: Complemental strand, 37755190 - 37754793
Alignment:
| Q |
148 |
atattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgacct |
247 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| || ||| |||||||||||| || |
|
|
| T |
37755190 |
atattttaatcatgtgttgatgttaatagattgcagaaaacgcttctcggaaatatggtgttagtaaaagtgattttcttgatccagaagctgatgatct |
37755091 |
T |
|
| Q |
248 |
tgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcg |
347 |
Q |
| |
|
|||| |||| | |||||| | |||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
37755090 |
tgcttcacgtcattctctggcacaaactcaagtgatttttgaaacaaaaaatgcatttaaaaaagctggagtgaatgtggagtctctggaggagcttgtg |
37754991 |
T |
|
| Q |
348 |
aagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttggga |
447 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
37754990 |
aattgtaaagttgatggcgtgaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttggga |
37754891 |
T |
|
| Q |
448 |
aatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
543 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||||| | ||||||| |||| |||||||||| |
|
|
| T |
37754890 |
aatttggtagtttggataaaataattctcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37754793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 148 - 543
Target Start/End: Complemental strand, 37761164 - 37760767
Alignment:
| Q |
148 |
atattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgacct |
247 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| || ||| |||||||||||| || |
|
|
| T |
37761164 |
atattttaatcatgtgttgatgttaatagattgcagaaaacgcttctcggaaatatggtgttagtaaaagtgattttcttgatccagaagctgatgatct |
37761065 |
T |
|
| Q |
248 |
tgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcg |
347 |
Q |
| |
|
|||| |||| | |||||| | |||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
37761064 |
tgcttcacgtcattctctggcacaaactcaagtgatttttgaaacaaaaaatgcatttaaaaaagctggagtgaatgtggagtctctggaggagcttgtg |
37760965 |
T |
|
| Q |
348 |
aagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttggga |
447 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
37760964 |
aattgtaaagttgatggcgtgaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttggga |
37760865 |
T |
|
| Q |
448 |
aatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
543 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||||| | ||||||| |||| |||||||||| |
|
|
| T |
37760864 |
aatttggtagtttggataaaataattctcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37760767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 148 - 508
Target Start/End: Original strand, 38605513 - 38605875
Alignment:
| Q |
148 |
atattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgacct |
247 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| || || |||||||||||| | |
|
|
| T |
38605513 |
atattttaatcatgtgttgatgttaatagattacagaaaacgttactcggaaacatggtgttagtaaaagtgatttattgggtccagaagctgatgatgt |
38605612 |
T |
|
| Q |
248 |
tgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcg |
347 |
Q |
| |
|
||||| | | |||||||||||||||| | ||||||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38605613 |
tgctgcaaatgttgctctgggagaaactgatgtgattttagaaacaaaaaatgcatttaaaaaggctggagtgaatgtggagtctttggaggagcttgcg |
38605712 |
T |
|
| Q |
348 |
aagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttggga |
447 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||| ||||||| || || ||||| |||||||| || ||||||||||||||| |||| ||||||| |
|
|
| T |
38605713 |
gagggtaaagtttatggcgttaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcagagatgtttggga |
38605812 |
T |
|
| Q |
448 |
aatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcc |
508 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||| |
|
|
| T |
38605813 |
aatttggtagtttggataaaataattctcccctcgacaagaacattggccctggtatttttcc |
38605875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 148 - 504
Target Start/End: Complemental strand, 37739338 - 37738980
Alignment:
| Q |
148 |
atattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgacct |
247 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||| ||| ||||||||||| || |
|
|
| T |
37739338 |
atattttaatcatgtgttgatgttaatagattgtagaaaacgctgctcggaaacatggtgttagtaaaagtgattttctggatccagaagctgatggtct |
37739239 |
T |
|
| Q |
248 |
tgctgtacg-tattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgc |
346 |
Q |
| |
|
|||| ||| |||| |||||| |||||| | | |||| ||||||||| || ||||||| ||||||||||||||| ||||| || ||||||||| ||| |
|
|
| T |
37739238 |
tgcttcacggtatt-ctctggcagaaactgacgggattaaagaaacaaaaaatgcatttagaaaagctggagtgaacgtggagtctctggaggagcatgc |
37739140 |
T |
|
| Q |
347 |
gaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttggg |
446 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||| |||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
37739139 |
gaagggtaaagttgatggcaggaaaagaagtaaccatgtacttttagcgaaaaatttgccatatggtgctacggaaaatgatcttgcaaagatgtttggg |
37739040 |
T |
|
| Q |
447 |
aaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtattt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
37739039 |
aaatttggtagtttggataaaataattctgccctcgacaaaaacattggccctggtattt |
37738980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 736 - 806
Target Start/End: Complemental strand, 37751443 - 37751373
Alignment:
| Q |
736 |
gaagaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacag |
806 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
37751443 |
gaagaagaagcatttgaaaaatgggaaaaatgtttctatgggatttggatttgttgagtttgactccacag |
37751373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 739 - 806
Target Start/End: Complemental strand, 37735936 - 37735869
Alignment:
| Q |
739 |
gaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacag |
806 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
37735936 |
gaagaagcatttgaaaaatgggaaaaatgtttctatgggatttggatttgttgagtttgactccacag |
37735869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 739 - 801
Target Start/End: Original strand, 38611128 - 38611190
Alignment:
| Q |
739 |
gaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactc |
801 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38611128 |
gaagaagcatttgaaaaaagggaaaaatgtttctatgggatttggatttgttgagtttgactc |
38611190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 595 - 715
Target Start/End: Complemental strand, 37754750 - 37754630
Alignment:
| Q |
595 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggag |
694 |
Q |
| |
|
||||| |||||| | ||||||| |||| | || ||||||||| |||| ||||||| |||||||| || ||||||| ||||||| |||||||| ||| | |
|
|
| T |
37754750 |
tatagcctagttttattataatttctaataaagttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtgg |
37754651 |
T |
|
| Q |
695 |
aaaagtcttgtgtcctaatat |
715 |
Q |
| |
|
|| ||||||||||||| |||| |
|
|
| T |
37754650 |
aacagtcttgtgtcctgatat |
37754630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 595 - 715
Target Start/End: Complemental strand, 37760724 - 37760604
Alignment:
| Q |
595 |
tatagactagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggag |
694 |
Q |
| |
|
||||| |||||| | ||||||| |||| | || ||||||||| |||| ||||||| |||||||| || ||||||| ||||||| |||||||| ||| | |
|
|
| T |
37760724 |
tatagcctagttttattataatttctaataaagttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtgg |
37760625 |
T |
|
| Q |
695 |
aaaagtcttgtgtcctaatat |
715 |
Q |
| |
|
|| ||||||||||||| |||| |
|
|
| T |
37760624 |
aacagtcttgtgtcctgatat |
37760604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 687
Target Start/End: Original strand, 38605974 - 38606051
Alignment:
| Q |
610 |
ttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtg |
687 |
Q |
| |
|
||||||| |||| | || ||||||||| |||||||| ||| ||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
38605974 |
ttataatttctaataaagttttcattcaattatgtcttaattcaactttcaatagtatttcttctttcataatatgtg |
38606051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 639 - 715
Target Start/End: Complemental strand, 37738848 - 37738773
Alignment:
| Q |
639 |
ttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggagaaaagtcttgtgtcctaatat |
715 |
Q |
| |
|
|||||||| ||| |||||||||| |||||||| |||| || |||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
37738848 |
ttatgtcttaattcaactttcaa-cgtatttcttcttccataatatgtggttgtggaacagtcttgtgtcctaatat |
37738773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University