View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12459_low_3 (Length: 496)

Name: NF12459_low_3
Description: NF12459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12459_low_3
NF12459_low_3
[»] chr7 (5 HSPs)
chr7 (3-482)||(25951849-25952325)
chr7 (61-449)||(25945286-25945674)
chr7 (329-482)||(25951543-25951696)
chr7 (336-482)||(25951696-25951842)
chr7 (329-456)||(25951407-25951543)
[»] chr8 (1 HSPs)
chr8 (68-336)||(2661261-2661529)


Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 3 - 482
Target Start/End: Complemental strand, 25952325 - 25951849
Alignment:
Q  3 agattatttagcttccccttctttctgcttcttcaaccgctttaacaacaatgcacaccttttctttcttccaactataggctgcacgccttctcccggt 102  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| || |||||||    
T  25952325 agattatttagcttccccttgtttctgcttcttcaaccgctttaacaa---tgcacaccttttctttcttccaactataggctgcacgcattttcccggt 25952229  T
Q  103 tcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcgcctcaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25952228 tcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatccaagaccagattgtttagtcctcggtttcgcctcaa 25952129  T
Q  203 taggatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactcttgaattt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25952128 taggatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactcttgaattt 25952029  T
Q  303 cccaacatcaactgatccctcctgacctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaattt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  25952028 cccaacatcaactgatccctcctgacctagaccctgctcctgtttattgtcatcatatttatcctcattaggcatgaaaattccggtggaaacaaaattt 25951929  T
Q  403 accggtttagtaagattttgtttcttcgaggagtcgctgtgttttcttctctttatacccttgaattatccaacatccac 482  Q
    |||||||||||||| |  ||||||||| |||| |||||||||||||||| ||||||||||| |||||  |||||||||||    
T  25951928 accggtttagtaaggtcctgtttcttcaaggaatcgctgtgttttcttcgctttataccctcgaatttcccaacatccac 25951849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 61 - 449
Target Start/End: Complemental strand, 25945674 - 25945286
Alignment:
Q  61 cttttctttcttccaactataggctgcacgccttctcccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgt 160  Q
    |||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25945674 cttttctttcttccgactacaggctgaatgccttctcccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgt 25945575  T
Q  161 taaatccaagaccagattgtttagtcctcggtttcgcctcaataggatttaatataccctgctcattcttcccaagaccacctcctttataacccatttt 260  Q
    |||||||||||||||| | ||||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25945574 taaatccaagaccagaatatttatccctcagtttcgcctcgataggatttaatataccctgctcattcttcccaagaccacctcctttataacccatttt 25945475  T
Q  261 ctccatcagcttcattcccattccgttataactcttgaatttcccaacatcaactgatccctcctgacctagaccctgctcctgtttattgtcatcaaat 360  Q
    ||||||||||||||||||||||||||| ||| |||  |||||||||||||| |||||| |||| |||||||||| ||||||||| |||||||||||||||    
T  25945474 ctccatcagcttcattcccattccgttgtaattctccaatttcccaacatccactgattcctcgtgacctagactctgctcctgcttattgtcatcaaat 25945375  T
Q  361 ttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaagattttgtttcttcgaggagtcgctgtgttttct 449  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || | |||| || ||||||| |||  |||||||||    
T  25945374 ttatcctcattaggcatgaaagttccggttgaaacaaaattcaccggtttagtgaggtcttgtatcctcgaggaatcgtcgtgttttct 25945286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 329 - 482
Target Start/End: Complemental strand, 25951696 - 25951543
Alignment:
Q  329 ctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaagattttgtttctt 428  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||| | |||||||||    
T  25951696 ctagaccctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttacatgtttagtaaggtcttgtttctt 25951597  T
Q  429 cgaggagtcgctgtgttttcttctctttatacccttgaattatccaacatccac 482  Q
    |||||| |||||||||||||||  | || ||| || |||||  |||||||||||    
T  25951596 cgaggaatcgctgtgttttctttgcgttctactctcgaatttcccaacatccac 25951543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 482
Target Start/End: Complemental strand, 25951842 - 25951696
Alignment:
Q  336 ctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaagattttgtttcttcgaggag 435  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||| | |||||||||||||||     
T  25951842 ctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttacatgtttagtaaggtcttgtttcttcgaggaa 25951743  T
Q  436 tcgctgtgttttcttctctttatacccttgaattatccaacatccac 482  Q
    |||||||||||||||  | || ||| || |||||  |||||||||||    
T  25951742 tcgctgtgttttctttgcgttctactctcgaatttcccaacatccac 25951696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 329 - 456
Target Start/End: Complemental strand, 25951543 - 25951407
Alignment:
Q  329 ctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaa---------acaaaatttaccggtttagtaagatt 419  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||         || ||||||||||||| |||||| |     
T  25951543 ctagaccctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttaccaaatttaccggttcagtaaggtc 25951444  T
Q  420 ttgtttcttcgaggagtcgctgtgttttcttctcttt 456  Q
    ||||||||||||||| | |||||||||||||| ||||    
T  25951443 ttgtttcttcgaggaatggctgtgttttcttcgcttt 25951407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 68 - 336
Target Start/End: Complemental strand, 2661529 - 2661261
Alignment:
Q  68 ttcttccaactataggctgcacgccttctcccggttcactcttcttctccgtctccaaagagggcaacggagttgtagtctcattagatatgttaaatcc 167  Q
    ||||||||||| |||||||||   |  ||||||||||| ||||||||||||||| |||||  ||||||||  |||| ||  | || |||  |||||||||    
T  2661529 ttcttccaactgtaggctgca---caactcccggttcagtcttcttctccgtctgcaaagcaggcaacggcattgtggttcccttcgattcgttaaatcc 2661433  T
Q  168 aagaccagattgtttagtcctcggtttcgcctcaataggatttaatataccctgctcattcttcccaagaccacctcctttataacccattttctccatc 267  Q
    ||||||||| | ||||| ||||   ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| | |    
T  2661432 aagaccagaatttttagccctcaacttcgcttcaataggatttaaaataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagc 2661333  T
Q  268 agcttcattcccattccgt---tataactcttgaatttcccaacatcaactgatccctcctgacctagaccc 336  Q
    ||||||||||| ||||| |   ||| ||||| ||||||||||||||| || || ||||||||||||| ||||    
T  2661332 agcttcattccaattccctttgtatgactctcgaatttcccaacatccacagacccctcctgacctaaaccc 2661261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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