View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12459_low_4 (Length: 449)

Name: NF12459_low_4
Description: NF12459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12459_low_4
NF12459_low_4
[»] chr6 (2 HSPs)
chr6 (196-281)||(32007123-32007208)
chr6 (196-294)||(32002201-32002298)
[»] scaffold0259 (1 HSPs)
scaffold0259 (120-194)||(6371-6444)
[»] scaffold0014 (2 HSPs)
scaffold0014 (212-291)||(66677-66756)
scaffold0014 (105-148)||(13132-13175)
[»] chr7 (1 HSPs)
chr7 (207-278)||(9335564-9335635)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 32007123 - 32007208
Alignment:
Q  196 ttgaaggcagcattacctttgagagaagagtgtgaatcggtggaaagttcggaagagaagagatcgtcggggagattcatttttgg 281  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32007123 ttgaagacagcattacctttgagagaagagtgtgaatcggtggaaagttcggaagagaagagatcgttggggagattcatttttgg 32007208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 32002201 - 32002298
Alignment:
Q  196 ttgaaggcagcattacctttgagagaagagtgtgaatcggtggaaagttcggaagagaagagatcgtcggggagattcatttttggataaatgctttct 294  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||| |||||||||    
T  32002201 ttgaaggcagcattacctttgagagaagagtgtgactcggtggaaagtttggaagagaagagatcgtc-ggaagattcatttttggatagatgctttct 32002298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 6371 - 6444
Alignment:
Q  120 ttcatatcaatgcttattttgattcatatttagtaaaactatcaaatcttaaacattgcaatcatctgtaacata 194  Q
    ||||||||||| |||||||||||||||||| |||||  |||||||||||||||||||||||| ||||| ||||||    
T  6371 ttcatatcaatacttattttgattcatattgagtaag-ctatcaaatcttaaacattgcaattatctgcaacata 6444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 66677 - 66756
Alignment:
Q  212 ctttgagagaagagtgtgaatcggtggaaagttcggaagagaagagatcgtcggggagattcatttttggataaatgctt 291  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||||| ||  | ||||| || ||||||||||||||||    
T  66677 ctttgagggaagagtgtgaatcggtggaaagttggcaagagaagagattgttagcgagatccagttttggataaatgctt 66756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 13132 - 13175
Alignment:
Q  105 aattcatcaatgtccttcatatcaatgcttattttgattcatat 148  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  13132 aattcatcaatgtccttcagatcaatacttattttgattcatat 13175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 9335635 - 9335564
Alignment:
Q  207 attacctttgagagaagagtgtga---atcggtggaaagttcggaagagaagagatcgtcggggagattcatttt 278  Q
    ||||||||||||||||||||| ||   |||||||   |||| ||| |||||||||||||||||||||||||||||    
T  9335635 attacctttgagagaagagtgcgacgaatcggtg---agtttggatgagaagagatcgtcggggagattcatttt 9335564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University