View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12459_low_8 (Length: 359)
Name: NF12459_low_8
Description: NF12459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12459_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 202 - 345
Target Start/End: Original strand, 38301450 - 38301593
Alignment:
| Q |
202 |
gaatcggataactcgtcaaattgttatgatttcagtgatggtgatgatgattgatttgcttgtatctatttaactttggtttataatgtgtcttttggct |
301 |
Q |
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| T |
38301450 |
gaattggataactcgtcaaatggttatgatttcagtgatggtgatgatgattgatttgcttgtatctatttaactttggtttataatgtgtcttttggct |
38301549 |
T |
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| Q |
302 |
ttatggattgtaaaattagaactatatatggttatgttatggtt |
345 |
Q |
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| T |
38301550 |
ttatggattgtaaaattagaactatatatggttatgctatggtt |
38301593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 38301262 - 38301386
Alignment:
| Q |
14 |
tgcacaattttgttaacaatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataaccactgttcaattgaattataaacctct |
113 |
Q |
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| T |
38301262 |
tgcacaattttgttaataatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataaccactgttcaattgaattataaacctct |
38301361 |
T |
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| Q |
114 |
tcaattatgatatgtagatggagaa |
138 |
Q |
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| T |
38301362 |
tcaattatgatatgtagatggagaa |
38301386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 38309904 - 38310026
Alignment:
| Q |
14 |
tgcacaattttgttaacaatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataaccactgttcaattgaattataaacctct |
113 |
Q |
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| T |
38309904 |
tgcacaattttgttggcaatggtaatttatgtaatttgaatgtaaatatatatgatttaattgttttgatagccactgttcaatttaattattatcctcc |
38310003 |
T |
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| Q |
114 |
tcaattatgatatgtagatggag |
136 |
Q |
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| T |
38310004 |
tcaattatgatatgtagatggag |
38310026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 38323017 - 38323112
Alignment:
| Q |
239 |
atggtgatgatgattgatttgcttgtatctatttaactttggtttataatg-tgtcttttggc-tttatggattgtaaaattagaactatatatggtt |
334 |
Q |
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| T |
38323017 |
atggtgatgatgattgatttgcttgtatttacttaactttggtttatgatgtttttttttggcttttatggtttg--aaattataactatatatggtt |
38323112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 38326929 - 38326999
Alignment:
| Q |
236 |
gtgatggtgatgatgattgatttgcttgtatctatttaactttggtttataatgtgtcttttggctttatgg |
307 |
Q |
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| T |
38326929 |
gtgatggtggtgatgattgatttgcttgtatttatttaactttagtttatgatg-attttttggctttatgg |
38326999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 38322007 - 38322128
Alignment:
| Q |
17 |
acaattttgttaacaatggtaatttatggaatttgaatgtaaatagatatgattttattggtttgataaccactgttcaattgaattataaacctcttca |
116 |
Q |
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| T |
38322007 |
acaattttgttcgcgatggtaatctacgtaatttaagtgtaaatacatatgattgtattgttttggtaactagttgtcactttaattattaaccttttca |
38322106 |
T |
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| Q |
117 |
attatgatatgtagatggagaa |
138 |
Q |
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| T |
38322107 |
attatgatatgtagttggagaa |
38322128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 38307205 - 38307277
Alignment:
| Q |
63 |
atatgattttattggtttgataaccactgttcaattgaattataaacctcttcaattatgatatgtagatgga |
135 |
Q |
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| T |
38307205 |
atatgattctgttgttttgataaccactggtcaattacattgttaacctcttcaattatgatttgtagatgga |
38307277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 38310135 - 38310218
Alignment:
| Q |
251 |
attgatttgcttgtatctatttaactttggtttataatgtgtcttttggctttatggattgtaaaattagaactatatatggtt |
334 |
Q |
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| T |
38310135 |
attgattatcttgtctttatttaactttgttttgtgatgtttgttttggctttatggtttgcaaaattaaaactatatatggtt |
38310218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 38317956 - 38318035
Alignment:
| Q |
52 |
aatgtaaatagatatgattttattggtttgataaccactgttcaattgaattataaacctcttcaattatgatatgtaga |
131 |
Q |
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| T |
38317956 |
aatgtaaataaatatgattgtattcttctgataaccagtggtcaattttattattaacctcttcaattgtgatatgtaga |
38318035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 38322225 - 38322275
Alignment:
| Q |
240 |
tggtgatgatgattgatttgcttgtatctatttaactttggtttataatgt |
290 |
Q |
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| T |
38322225 |
tggtgatgatggttgatttgcttgtatctatttaacttctgtttatgatgt |
38322275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 38318115 - 38318183
Alignment:
| Q |
237 |
tgatggtgatgatgattgatttgcttgtatctatttaactttggtttataatgtgtcttttggctttat |
305 |
Q |
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| T |
38318115 |
tgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgtttgttttgactttat |
38318183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 38326786 - 38326841
Alignment:
| Q |
78 |
tttgataaccactgttcaattgaattataaacctcttcaattatgatatgtagatg |
133 |
Q |
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| T |
38326786 |
tttgataaccacaggtctatttaattattaacctcttcaattttgatatgtagatg |
38326841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 38849184 - 38849094
Alignment:
| Q |
244 |
gatgatgattgatttgcttgtatctatttaactttggtttataatgtgtcttttggctttatggattgtaaaattagaactatatatggtt |
334 |
Q |
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| T |
38849184 |
gatgatgattgatttgcttgtatttatttaactttggtttatcatgtttattttggatttatggtttaaaaaattaaaactatatttggtt |
38849094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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