View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12459_low_9 (Length: 357)
Name: NF12459_low_9
Description: NF12459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12459_low_9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 5446065 - 5445709
Alignment:
| Q |
1 |
acaaatccttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaagctcaataactgtttgtgaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446065 |
acaaatccttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaagctcaataactgtttgtgaaga |
5445966 |
T |
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| Q |
101 |
tgaagaaagtaacctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445965 |
tgaagaaagtaacctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatga |
5445866 |
T |
|
| Q |
201 |
aataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacctggaacattccttcatcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445865 |
aataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacctggaacattccttcatcaa |
5445766 |
T |
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| Q |
301 |
tggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattct |
357 |
Q |
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| T |
5445765 |
tggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattct |
5445709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 101 - 346
Target Start/End: Original strand, 5440705 - 5440959
Alignment:
| Q |
101 |
tgaagaaagtaacctctttgctttctcacatgctgatcttaac----ctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttct |
196 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5440705 |
tgaagaaggtaacctctttgctttctcacatgctgaccttaactaacctccccaaagctttggaattctcactgatcttcaaatccttcttgtactttct |
5440804 |
T |
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| Q |
197 |
atgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaa--atga--gtatctcccaatgtggccttaacctggaacattcc |
292 |
Q |
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|| |||||||||||||||| ||||||||||||||||||| || |||| | ||||||| || | |||| || |||||| || ||||| | ||| ||||| |
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| T |
5440805 |
ataaaataattcaacaagaaggttcaccaaattgttatcaaactcaacatcacccaaacattaacgtatgtctcaatgttgctttaactttgaatattcc |
5440904 |
T |
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| Q |
293 |
ttcatcaatggt-cactaaggaaacatcgaatgttccaccaccaagatcaaacac |
346 |
Q |
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| T |
5440905 |
ttcgtcaatgatggactaaggaaacatcaaaagttccaccaccaaggtcgaacac |
5440959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 114 - 281
Target Start/End: Original strand, 5433330 - 5433497
Alignment:
| Q |
114 |
ctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaa |
213 |
Q |
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|||||| |||| ||||||||||| ||||| |||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
5433330 |
ctctttactttatcacatgctgaccttaatctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaaacaattcaacaa |
5433429 |
T |
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| Q |
214 |
gacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacc |
281 |
Q |
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|||||||||||||||||||||| || |||| ||||| ||||||||||||| ||||| ||| |||||| |
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| T |
5433430 |
gacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggctttaacc |
5433497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 5432453 - 5432565
Alignment:
| Q |
150 |
aaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccac |
249 |
Q |
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|||||||| ||||||||| || ||||| || ||||||||| |||| | || ||||||||||||| |||||||||||||||||| |||| | | ||| |
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| T |
5432453 |
aaagctttataattctcaccaatgttcaagtctttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaaattgaaagcac |
5432552 |
T |
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| Q |
250 |
ccaaatgagtatc |
262 |
Q |
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||||||||||||| |
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| T |
5432553 |
ccaaatgagtatc |
5432565 |
T |
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