View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1245_high_18 (Length: 389)
Name: NF1245_high_18
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 33942584 - 33942719
Alignment:
| Q |
1 |
tcaacaccaaaaataaacaaatgaaagtgagctttacatatatagacttagctagggttttgcttggaagttaagaaaagtgaaaagacgcataaaccta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33942584 |
tcaacaccaaaaataaacaaatgaaagtgagctttacatatctagacttagctagggttttgcttggaagttaagaaaagtgaaaagacgcataaaccta |
33942683 |
T |
|
| Q |
101 |
gaaattgaaagttaccttaatttataaagggatttt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33942684 |
gaaattgaaagttaccttaatttataaagggatttt |
33942719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 33942759 - 33942822
Alignment:
| Q |
179 |
tcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggcaag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33942759 |
tcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggcaag |
33942822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 33934466 - 33934538
Alignment:
| Q |
64 |
ttggaagttaagaaaagtgaaaagacgcataaacctagaaatt-gaaagttaccttaatttataaagggatttt |
136 |
Q |
| |
|
||||||||||| |||| |||||| ||| |||||| |||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
33934466 |
ttggaagttaaaaaaactgaaaa-acgattaaaccaagaattttgaaagttaccttaatttataaagagatttt |
33934538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 33934578 - 33934639
Alignment:
| Q |
179 |
tcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggca |
240 |
Q |
| |
|
|||||||||| ||||| |||||||||||| || ||| ||| ||||||||||||||| |||| |
|
|
| T |
33934578 |
tcggaggagagaaggcggttccagagagaatcttcaacggagaggcggtgaaggaggcggca |
33934639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University