View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_high_20 (Length: 372)

Name: NF1245_high_20
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_high_20
NF1245_high_20
[»] chr2 (5 HSPs)
chr2 (58-309)||(37332187-37332437)
chr2 (58-134)||(37332971-37333047)
chr2 (58-109)||(37332885-37332936)
chr2 (101-134)||(37332452-37332485)
chr2 (70-138)||(44437925-44437993)
[»] chr4 (6 HSPs)
chr4 (70-129)||(44360097-44360155)
chr4 (70-129)||(54470217-54470276)
chr4 (191-264)||(10209179-10209251)
chr4 (76-129)||(50471542-50471595)
chr4 (70-138)||(35555851-35555919)
chr4 (70-138)||(42285904-42285972)
[»] chr1 (1 HSPs)
chr1 (76-138)||(10272275-10272337)
[»] chr5 (3 HSPs)
chr5 (70-138)||(10082943-10083011)
chr5 (70-138)||(33667226-33667294)
chr5 (70-129)||(31636133-31636192)
[»] chr3 (1 HSPs)
chr3 (77-131)||(31453149-31453203)
[»] chr8 (1 HSPs)
chr8 (107-140)||(10080109-10080142)
[»] chr7 (1 HSPs)
chr7 (70-138)||(36514411-36514479)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 58 - 309
Target Start/End: Complemental strand, 37332437 - 37332187
Alignment:
Q  58 ttgggataacaactataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgaggattttagggtactaaagttaga 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||    
T  37332437 ttgggataacaactataatagaaaagatgatagaaactagatcaaagttgtttcggcatatagagagaagacgtgaggattttagggt-ctaaagttaga 37332339  T
Q  158 gtggagtcaaattactcgagggaacgatctagaaaaaaccatgagagaaactattaagaatggcctagatatataatgagttggagaaatacaaggtttt 257  Q
    |||||||||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37332338 gtggagtcaaattactggagggaccgacctagaaaaaatcatgagagaaactattaagaatggcctagatatataatgagttggagaaatacaaggtttt 37332239  T
Q  258 agatagatttttccattgatgagttggagtacttgcgctctttccatacatg 309  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37332238 agatagatttttccattgatgagttggcgtacttgcgctctttccatacatg 37332187  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 37333047 - 37332971
Alignment:
Q  58 ttgggataacaactataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgag 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37333047 ttgggataacaactataatagaaaagatgatagaaactagatcaaagttgtttcggcatgtagagagaagacgtgag 37332971  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 37332936 - 37332885
Alignment:
Q  58 ttgggataacaactataatagaaaagatgatagaaactagatcaaagttgtt 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37332936 ttgggataacaactataatagaaaagataatagaaactagatcaaagttgtt 37332885  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 37332485 - 37332452
Alignment:
Q  101 aaagttgtttgggcatgtagagagaagacgtgag 134  Q
    |||||||||| |||||||||||||||||||||||    
T  37332485 aaagttgtttcggcatgtagagagaagacgtgag 37332452  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 44437993 - 44437925
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgaggatt 138  Q
    ||||| ||||||||||| |||||||||||   | || |||| |||||||||||||||||| || |||||    
T  44437993 ctatagtagaaaagatggtagaaactagacataggtggtttcggcatgtagagagaagacttgtggatt 44437925  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 44360097 - 44360155
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagac 129  Q
    ||||| ||||||||||| |||||||||||| |  ||||||||||||||||||||||||||    
T  44360097 ctatagtagaaaagatggtagaaactagattag-gttgtttgggcatgtagagagaagac 44360155  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 54470217 - 54470276
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagac 129  Q
    ||||| ||||||||||| | |||||||||   |||| |||||||||||||||||||||||    
T  54470217 ctatagtagaaaagatggtggaaactagacttaagtggtttgggcatgtagagagaagac 54470276  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 10209179 - 10209251
Alignment:
Q  191 aaaaaccatgagagaaactattaagaatggcctagatatataatgagttggagaaatacaaggttttagataga 264  Q
    |||||| || ||||||||||||||||| |  ||||| || |||||||||||||||| ||| |||||| ||||||    
T  10209179 aaaaactataagagaaactattaagaaggatctagagat-taatgagttggagaaagacatggtttttgataga 10209251  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 50471542 - 50471595
Alignment:
Q  76 tagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagac 129  Q
    ||||||||||| | |||||||| |  |||| |||||||||||||||||||||||    
T  50471542 tagaaaagatggtggaaactaggtttaagtggtttgggcatgtagagagaagac 50471595  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 35555919 - 35555851
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgaggatt 138  Q
    ||||| ||||||||||| |||||||||||   | || |||||||||| |||||||||||| || |||||    
T  35555919 ctatagtagaaaagatggtagaaactagacttaggtggtttgggcatttagagagaagacctgtggatt 35555851  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 42285972 - 42285904
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgaggatt 138  Q
    ||||| ||||||||||| |||||||||||   | || ||||||||||||| ||||||||| || |||||    
T  42285972 ctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtatagagaagacctgtggatt 42285904  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 10272275 - 10272337
Alignment:
Q  76 tagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgaggatt 138  Q
    ||||||||||| |||||||||||  ||||| |||| |||||||||||||||||| || |||||    
T  10272275 tagaaaagatggtagaaactagactaaagtggttttggcatgtagagagaagacctgtggatt 10272337  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 10083011 - 10082943
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgaggatt 138  Q
    ||||| ||||||||||| |||||||||||   |||| |||| |||||||||||||||||| || |||||    
T  10083011 ctatagtagaaaagatggtagaaactagacttaagtggtttcggcatgtagagagaagacttgtggatt 10082943  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 33667226 - 33667294
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgaggatt 138  Q
    ||||| ||||||||||| |||||||||||   | || ||||||||||||||||||||||| || |||||    
T  33667226 ctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagacctgtggatt 33667294  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 31636192 - 31636133
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagac 129  Q
    ||||| ||||||||||| |||||||||||   | || |||||||||||||||||||||||    
T  31636192 ctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagac 31636133  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 31453203 - 31453149
Alignment:
Q  77 agaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgt 131  Q
    |||||||||| |||||||||||   | ||||||| ||||||||||||||||||||    
T  31453203 agaaaagatggtagaaactagacttaggttgttttggcatgtagagagaagacgt 31453149  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 10080142 - 10080109
Alignment:
Q  107 gtttgggcatgtagagagaagacgtgaggatttt 140  Q
    ||||||||||||||||||||||| ||||||||||    
T  10080142 gtttgggcatgtagagagaagacctgaggatttt 10080109  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 36514479 - 36514411
Alignment:
Q  70 ctataatagaaaagatgatagaaactagatcaaagttgtttgggcatgtagagagaagacgtgaggatt 138  Q
    ||||| ||||||||||| |||||||||||   | || ||||||||||||||||||| ||| || |||||    
T  36514479 ctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagacgacttgtggatt 36514411  T

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