View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_21 (Length: 371)
Name: NF1245_high_21
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 30 - 371
Target Start/End: Complemental strand, 40709127 - 40708778
Alignment:
| Q |
30 |
ctttatatatcttgcaagtggctaaatgcttaatcaatttctttattaccgttgccacattttcatagaaaatcaatgatattaatggccatgaaagcct |
129 |
Q |
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| T |
40709127 |
ctttatatatcttgcaagtggctaaatgcttaatcaatttcttcattaccgttgccacattttcatagaaaatcaatgatattaatggccatgaaagcct |
40709028 |
T |
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| Q |
130 |
aagaacaacggttagataaactctataacggtaagcatttaaaccaattgagtaaaggacacttgattgattgtgcaacacatgcttgcttatgatcaat |
229 |
Q |
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| T |
40709027 |
aagaacaacggttagataaactctataacggtaagcatttaaaccaattgagtaaaggacacttg----attgtgcaacacatgcttgcttatgatcaat |
40708932 |
T |
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| Q |
230 |
aatcatgttcatcaaccaaagcaacatttgattattgatactcactgagtttttctattgtc------------aacaactcagcactcccttactcttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40708931 |
aatcatgttcatcaaccaaagcaacatttgattattgatactcactgagtttttctattgtccttcctccgcttaacaactcagcactcccttactcttt |
40708832 |
T |
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| Q |
318 |
atcctccatgttctcttttatcctataaactctttattcccagcaattttcatc |
371 |
Q |
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| T |
40708831 |
atcctccatgttctcttttatcctataaactctttattcccagcaattttcatc |
40708778 |
T |
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