View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_high_23 (Length: 340)

Name: NF1245_high_23
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_high_23
NF1245_high_23
[»] chr8 (1 HSPs)
chr8 (39-167)||(44663585-44663711)
[»] chr6 (1 HSPs)
chr6 (39-167)||(31444797-31444923)
[»] chr2 (1 HSPs)
chr2 (39-167)||(4453804-4453930)
[»] chr3 (1 HSPs)
chr3 (39-93)||(52130815-52130869)
[»] chr7 (2 HSPs)
chr7 (39-113)||(21820129-21820202)
chr7 (39-93)||(7841313-7841367)
[»] chr4 (3 HSPs)
chr4 (39-93)||(32651244-32651298)
chr4 (39-93)||(41810197-41810251)
chr4 (39-112)||(38467666-38467739)
[»] chr1 (3 HSPs)
chr1 (39-93)||(14184711-14184765)
chr1 (39-93)||(17726058-17726112)
chr1 (9-42)||(27215671-27215704)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 167
Target Start/End: Complemental strand, 44663711 - 44663585
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaaccnnnnnnnnngcgccattagtctatc 138  Q
    ||||||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||         ||||||||||||||||    
T  44663711 acactccaattaccacttaaaaccctaattctatgatttt-aggcgccaatcaatattagcccttggatccaacc-ctttttttgcgccattagtctatc 44663614  T
Q  139 aaccctacatctaatcttgattatgggaa 167  Q
    |||||||||||||||||||||||||||||    
T  44663613 aaccctacatctaatcttgattatgggaa 44663585  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 31444797 - 31444923
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaaccnnnnnnnnngcgccattagtctatc 138  Q
    ||||||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||         ||||||||||||||||    
T  31444797 acactccaattactacttaaaaccctaattctataatttt-aggcgccaatcaatattagcccttggatccaacc-ctttttttgcgccattagtctatc 31444894  T
Q  139 aaccctacatctaatcttgattatgggaa 167  Q
    |||||||||||||||||||||||||||||    
T  31444895 aaccctacatctaatcttgattatgggaa 31444923  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 4453804 - 4453930
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaaccnnnnnnnnngcgccattagtctatc 138  Q
    ||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||         ||||||||||||||||    
T  4453804 acactccaattaccacttaaaaccctaattctatgatttt-aggcgccaatcaatattaacccttggatctaacc-ctttttttgcgccattagtctatc 4453901  T
Q  139 aaccctacatctaatcttgattatgggaa 167  Q
    |||||||||||||||||||||||||||||    
T  4453902 aaccctacatctaatcttgattatgggaa 4453930  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 52130815 - 52130869
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 93  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  52130815 acactccaattaccacttaaaaccctaattctaagatttttaggcgccaatcaat 52130869  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 21820202 - 21820129
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaacc 113  Q
    ||||||||||||  ||| |||||| ||||||||  |||||||||||||||||| |||||||| ||||||||||||    
T  21820202 acactccaattaacacttaaaaccataattctac-atttttaggcgccaatcagtattagccattggatctaacc 21820129  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 7841313 - 7841367
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 93  Q
    |||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  7841313 acactctaattaccacttaaaaccctaattctaagatttttaggtgtcaatcaat 7841367  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 32651298 - 32651244
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 93  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||    
T  32651298 acactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaat 32651244  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 41810197 - 41810251
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 93  Q
    ||||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||    
T  41810197 acactccaattaccacttaaaaccctaattttaagatttttaagcgccaatcaat 41810251  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 38467739 - 38467666
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 112  Q
    ||||||||||||  ||| |||||||||||||||    |||||||||||||||| |||||||| |||||||||||    
T  38467739 acactccaattaacacttaaaaccctaattctacttattttaggcgccaatcagtattagccattggatctaac 38467666  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 14184711 - 14184765
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 93  Q
    |||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  14184711 acactctaattaccacttaaaactctaattctaagatttttaggcgccaatcaat 14184765  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 17726058 - 17726112
Alignment:
Q  39 acactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 93  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||    
T  17726058 acactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaat 17726112  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 27215704 - 27215671
Alignment:
Q  9 agcagagagcaacttcatcaaatcaccttcacac 42  Q
    ||||||||||||||||||||||||||||||||||    
T  27215704 agcagagagcaacttcatcaaatcaccttcacac 27215671  T

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