View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_high_28 (Length: 331)

Name: NF1245_high_28
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_high_28
NF1245_high_28
[»] chr1 (1 HSPs)
chr1 (30-331)||(35340739-35341040)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 331
Target Start/End: Complemental strand, 35341040 - 35340739
Alignment:
Q  30 ggagtctcttgacttgcatgcaatgaatctctcaggctcattgtcttccagcattggtggtttggttcacttgcttcaccttaatctgtctcaaaacact 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35341040 ggagtctcttgacttgcatgcaatgaatctctcaggctcattgtcttccagcattggtggtttggttcacttgcttcaccttaatctgtctcaaaacact 35340941  T
Q  130 ttctctggttttataccaaaggaaattggaaactgttcaagtttgcaagttcttggcctcaacatcaatgaatttgaaggtcaaattcctgtagaaatag 229  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340940 ttctctggttctataccaaaggaaattggaaactgttcaagtttgcaagttcttggcctcaacatcaatgaatttgaaggtcaaattcctgtagaaatag 35340841  T
Q  230 gccggctttcgaatttaaccgagttgcatctttcaaacaaccagctctctggacctttaccagatgcaattggtaacctttcttcactctcaatagttac 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340840 gccggctttcgaatttaaccgagttgcatctttcaaacaaccagctctctggacctttaccagatgcaattggtaacctttcttcactctcaatagttac 35340741  T
Q  330 tc 331  Q
    ||    
T  35340740 tc 35340739  T

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