View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_33 (Length: 303)
Name: NF1245_high_33
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 5399716 - 5399450
Alignment:
| Q |
9 |
atcatagggaggttggaaggtaggagaatgatgagcatcatgataaagtttgacttgacaattagaccttagtggaaattttgcatcctttaacccttga |
108 |
Q |
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| T |
5399716 |
atcaaagggaggttggaaggtaggagaatgatgagcatcatgataaagtttgacttgacaattagaccttagtggaaattttgcatcctttaacccttga |
5399617 |
T |
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| Q |
109 |
aattcattattgctgagtacctttgccaaactttgttccaattttgcaggcttgaaccataatataaatttcaatttaagtttagggtttggtttttcat |
208 |
Q |
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| T |
5399616 |
aattcattattgcttagtacctttgccaaactttgttccaattttgcaggcttaaaccataatataaatttcaatttaagtttagggtttggtttttcat |
5399517 |
T |
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| Q |
209 |
tttccatgaggagaggaaatattccattgattatacttccttcctttaaaagttgttgggccttgat |
275 |
Q |
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| T |
5399516 |
tttccatgaggagaggaaatattccattgattatacttccttcctttaaaagttgttgggccttgat |
5399450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 43053871 - 43054079
Alignment:
| Q |
16 |
ggaggttggaaggtaggagaatgatgagcatcatgataaagtttgacttgacaattagaccttagtggaaattttgcatcctttaacccttgaaattcat |
115 |
Q |
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|||||||| || ||||| ||||| |||||||||||||| || || || ||||||||||||||| |||||||| | |||||| | | ||||||||| || | |
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| T |
43053871 |
ggaggttgaaaagtaggtgaatggtgagcatcatgatagagcttaacatgacaattagacctttgtggaaatgtagcatccctaagcccttgaaactctt |
43053970 |
T |
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| Q |
116 |
tattgctgagtacctttgccaaactttgttccaattttgcaggcttgaaccataatataaatttcaatttaagtttagggtttggtttttcattttccat |
215 |
Q |
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| T |
43053971 |
cactacttagtagctttgtccaacttggttccaaatttgctggcttgaaccataatataaaccttaattttagttcttgatttggtttaccattttccat |
43054070 |
T |
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| Q |
216 |
gaggagagg |
224 |
Q |
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|||||||| |
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| T |
43054071 |
taggagagg |
43054079 |
T |
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