View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_34 (Length: 302)
Name: NF1245_high_34
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 35472570 - 35472802
Alignment:
| Q |
47 |
gcatttgatcggttcatactaccaaatcaaggcaatgcatgcttaaaacgtaaattatgtaatctt-------aatccacaagttcatgtagattattag |
139 |
Q |
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| T |
35472570 |
gcatttgatcggtt-atactatcaaatcaaggcaatgcatgcttaaaacgtaaattatgtaatcttaattcttaatccacaagttcatgtagattattag |
35472668 |
T |
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| Q |
140 |
gttcaaggccactatccataaactctttccaaatcatatttattttcaaagtgaagtttgagtttttcttgatacattctcttacactattggattttgt |
239 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35472669 |
gttcaaggccactatctataaactctttccaaatcatatttattttcaaagtgaaatttgagtttttcttgatacattctcttacactattggattttgt |
35472768 |
T |
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| Q |
240 |
atgtagatatatttggtagtccgaatgtatagac |
273 |
Q |
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| T |
35472769 |
atgtagatatatttggtagtccgaatgtatagac |
35472802 |
T |
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