View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_36 (Length: 293)
Name: NF1245_high_36
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 284
Target Start/End: Complemental strand, 41113551 - 41113277
Alignment:
| Q |
28 |
caagtttatctttattagttttctcgaggtttagcattataataaaagttagattgtgataactctgatgnnnnnnnn-atgaaacctctgcagtcatgt |
126 |
Q |
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| T |
41113551 |
caagtttatctttattagttttctcgaggtttagcattataataaaagttagattgtgataactccgatgtttttttttatgaaacctctgcagtcatgt |
41113452 |
T |
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| Q |
127 |
tgttgatatcattagcaaaatatttctttatcacttttaattgaggattagagacaataaataatgtttgacagcaacagaacatct------------- |
213 |
Q |
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| T |
41113451 |
tgttgatatcattagcaaaatatttctttatcacttttaattgaggattagagacaataaataatgtttgacagcaacagaacatctacgcttcaatcga |
41113352 |
T |
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| Q |
214 |
----atgcttcaatcgtaatggggtggttttctttatattgaatccaaacatacactctgaaacaacattcatct |
284 |
Q |
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| T |
41113351 |
aatcatgcttcaatcgtaatggggtggttttctttatattgaatccaaacatacactctgaaacaacatgcatct |
41113277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 41099699 - 41099634
Alignment:
| Q |
29 |
aagtttatctttattagttttctcgaggtttagcattataataaaagttagattgtgataactctg |
94 |
Q |
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| T |
41099699 |
aagtttatctttatttgttttctcgaggtttagcattataacatacgttagattgtgataactctg |
41099634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 41098341 - 41098290
Alignment:
| Q |
154 |
ttatcacttttaattgaggattagagacaataaataatgtttgacagcaaca |
205 |
Q |
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| T |
41098341 |
ttatcacttttaatagaggtttagaaacaatcaataatgtttgatagcaaca |
41098290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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