View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_37 (Length: 285)
Name: NF1245_high_37
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_37 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 64 - 285
Target Start/End: Complemental strand, 44475908 - 44475699
Alignment:
| Q |
64 |
aagtcagtgttaagtatttatatgagatcaccctttctcattgtcctgatctctgcataggaaaaatgaacatgagattagatgtcataaacacatagta |
163 |
Q |
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| T |
44475908 |
aagtcagtgttaagtatttatatgagatcaccctttctcattgtcctgatctctgcataggaaaaatgaacatgagattagatgtcataaacacatagta |
44475809 |
T |
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| Q |
164 |
catgtgatgcacaaattcataaaatatatacatgtatagatacatgtaagaaagctaggagtttgtaatatatactctcgagtccctgtcacattctttc |
263 |
Q |
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| T |
44475808 |
catgtgatgcacaaattcataaaatatataca------------tgtaagaaagctaggagtttgtaatatatactctcgagtccctgtcacattctttc |
44475721 |
T |
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| Q |
264 |
ttcctatttaattattcatatt |
285 |
Q |
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| T |
44475720 |
ttcctatttaattattcatatt |
44475699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 38452708 - 38452752
Alignment:
| Q |
241 |
tcgagtccctgtcacattctttcttcctatttaattattcatatt |
285 |
Q |
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| T |
38452708 |
tcgagtccctatcacgttctttcttcctatttaattattcatatt |
38452752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 38452328 - 38452390
Alignment:
| Q |
69 |
agtgttaagtatttatatg-agatcaccctttctcattgtcctgatctctgcataggaaaaat |
130 |
Q |
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| T |
38452328 |
agtgttaagcatttatatggagatcaccctttctcatcatcataacctctgcataggaaaaat |
38452390 |
T |
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