View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_4 (Length: 597)
Name: NF1245_high_4
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 13 - 568
Target Start/End: Original strand, 46632283 - 46632838
Alignment:
| Q |
13 |
aatatgaagtagttatagtcatgaaattcggttttgtgcatgtaggaaatggacagaggcttggaagacaacatcaaaattgtggagatggatttttgtg |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632283 |
aatatgaagtagttctagtcatgaaattcggttttgtgcatgtaggaaatggacagaggcttggaagacaacatcaaaattgtggagatggatttttgtg |
46632382 |
T |
|
| Q |
113 |
aatcaaaaggcaactctacaagcagaagcagcagtgtaaatagacaacattatgagcaatctgaaaatagatattccataaatggttcctacacgaaaga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46632383 |
aatcaaaaggcaactctacaagcagaagcagcagtgtaaatagacaacattatgagcaatctgaaaatagatattccataaatggttcctatacgaaaga |
46632482 |
T |
|
| Q |
213 |
agaaaactacaaagtatcaccagctccatcagctttaacagaattgagtccaaaagcatgcagtggccattttgaggattgcttcagtacagctcaaagc |
312 |
Q |
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| T |
46632483 |
agaaaactacaaagtatcaccagctccatcagctttaacagaattgagtccaaaagcatgcagtggccattttgaggattgcttcagtacagctcaaagc |
46632582 |
T |
|
| Q |
313 |
agtcctcaatgctattctgctatatcaaaaacagatgaatcaaatcacccttttgctttccctaggccatcttatgcagaacaaatgtcctatgactacc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632583 |
agtcctcaatgctattctgctatatcaaaaacagatgaatcaaatcacccttttgctttccctaggccatcttatgcagaacaaatgtcctatgactacc |
46632682 |
T |
|
| Q |
413 |
ctttgtatccaagttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggcctgattcatttgagaggcaact |
512 |
Q |
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| T |
46632683 |
ctttgtatccaagttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggcctgattcatttgagaggcaact |
46632782 |
T |
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| Q |
513 |
gagtcggcggagaatttcggttgaaggaagaaatgttcctaggccagtgaggatgc |
568 |
Q |
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| T |
46632783 |
gagtcggcggagaatttcggttgaaggaagaaatgttcctaggccagtgaggatgc |
46632838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 223 - 567
Target Start/End: Original strand, 15506783 - 15507130
Alignment:
| Q |
223 |
aaagtatcaccagctccatcagctttaacagaattgagtccaaaagcatgcagtggccattttgaggattgct---tcagtacagctcaaagcagtcctc |
319 |
Q |
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|||| ||||||| | |||||||| ||||||| | || |||| |||||||||||| |||||||||||||| | |||||||||| || | |||||| |
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| T |
15506783 |
aaagaatcaccaacaccatcagcactaacagattcaagcccaagagcatgcagtggacattttgaggattgttccctcagtacagcacagaacagtccct |
15506882 |
T |
|
| Q |
320 |
aatgctattctgctatatcaaaaacagatgaatcaaatcacccttttgctttccctaggccatcttatgcagaacaaatgtcctatgactaccctttgta |
419 |
Q |
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| | ||| || ||| | |||| | |||| | ||||| | |||||||||||| |||| | ||| |||| |||| || || ||||||| || || | |
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| T |
15506883 |
attactactcagctgtttcaagagtagataattcaaagcttccttttgctttcactagacaatcctatgaagaatccattcccaatgactatccattatt |
15506982 |
T |
|
| Q |
420 |
tccaagttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggcctgattcatttgagaggcaactgagtcgg |
519 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| || | ||||| |||| ||||||| |
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| T |
15506983 |
tccaaattacatggctaacacagaatcatcaagagctaaagtcagatcacaaagtgcaccgaagcaaaggccggacatgtacgagagacaaccgagtcgg |
15507082 |
T |
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| Q |
520 |
cggagaatttcggttgaaggaagaaatgttcctaggccagtgaggatg |
567 |
Q |
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|| ||| ||| || ||||||||||||||||| ||||||||||||||| |
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| T |
15507083 |
cgaagagcttctgtggaaggaagaaatgttccaaggccagtgaggatg |
15507130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 490
Target Start/End: Complemental strand, 45768377 - 45768313
Alignment:
| Q |
426 |
ttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggc |
490 |
Q |
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||||||||| || || ||||| || |||||||| |||||||||||||||||||||| |||||||| |
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| T |
45768377 |
ttacatggcaaacactgaatcttctagagctaaggttagatcacaaagtgcaccaagacaaaggc |
45768313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 11979706 - 11979843
Alignment:
| Q |
92 |
ttgtggagatggatttttgtgaatcaaaaggcaactctacaagcagaagcagcagtgta-aatagaca---acattatgagcaatctgaaaatagatatt |
187 |
Q |
| |
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|||||||||||||||||||||||||||| || || ||| |||||||||||| ||||||| | || | | ||||||||| |||| |||| ||||||||| |
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| T |
11979706 |
ttgtggagatggatttttgtgaatcaaatggtaattctgcaagcagaagcaacagtgtatattacaaatggacattatgaacaatttgaacatagatatt |
11979805 |
T |
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| Q |
188 |
ccataaatggttcctacacgaaagaagaaaactacaaa |
225 |
Q |
| |
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||| ||||||||||||| | ||||||||||| |||||| |
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| T |
11979806 |
ccacaaatggttcctactcaaaagaagaaaaatacaaa |
11979843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 492
Target Start/End: Original strand, 42635284 - 42635355
Alignment:
| Q |
421 |
ccaagttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggcct |
492 |
Q |
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||||||||||||||| ||||||| || ||| || ||||||||||| | ||||||||||||||||||||| |
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| T |
42635284 |
ccaagttacatggcttatacagagtcggcaaaggccaaagttagatctctgagtgcaccaaaacaaaggcct |
42635355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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