View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_44 (Length: 266)
Name: NF1245_high_44
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 21306940 - 21307049
Alignment:
| Q |
148 |
tgcatttaactagcaagagagatttagttagcattaaacttaaaaataaaagcatcaaaactgcatttgacaaaagaaatatttagaaatttatatattt |
247 |
Q |
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| T |
21306940 |
tgcatttaactagcaagagaaatttagttagcattaaacttaaaaataaaagcatcaaaactgcatttgataaaagaaatatttagaaatttatatattt |
21307039 |
T |
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| Q |
248 |
ctctattttt |
257 |
Q |
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|||||||||| |
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| T |
21307040 |
ctctattttt |
21307049 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 21306819 - 21306877
Alignment:
| Q |
27 |
aaaggaaaatgctaccaaatagcatagtatactagttaaagaaataaatatagtgtatt |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21306819 |
aaaggaaaatgctaccaaatagcatagtatactagttaaagaaataaatatagtgtatt |
21306877 |
T |
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