View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_high_47 (Length: 255)

Name: NF1245_high_47
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_high_47
NF1245_high_47
[»] chr1 (6 HSPs)
chr1 (14-222)||(32922561-32922769)
chr1 (14-190)||(24428069-24428243)
chr1 (17-222)||(42131576-42131779)
chr1 (14-120)||(32109891-32109995)
chr1 (83-133)||(39220485-39220535)
chr1 (184-222)||(44021851-44021889)
[»] chr2 (8 HSPs)
chr2 (14-219)||(5848620-5848825)
chr2 (14-222)||(33171318-33171525)
chr2 (14-219)||(15745983-15746191)
chr2 (33-194)||(18579970-18580129)
chr2 (42-209)||(5509637-5509802)
chr2 (79-219)||(40492559-40492694)
chr2 (145-210)||(19051249-19051314)
chr2 (174-206)||(36098451-36098483)
[»] chr8 (6 HSPs)
chr8 (14-219)||(17834588-17834793)
chr8 (14-222)||(10259916-10260124)
chr8 (14-208)||(8783018-8783214)
chr8 (144-222)||(9605330-9605408)
chr8 (17-134)||(16912787-16912903)
chr8 (121-207)||(16912677-16912763)
[»] chr7 (5 HSPs)
chr7 (14-219)||(13596408-13596613)
chr7 (14-219)||(23040482-23040687)
chr7 (14-222)||(48858930-48859138)
chr7 (14-219)||(22910661-22910866)
chr7 (23-204)||(26754380-26754561)
[»] chr6 (1 HSPs)
chr6 (13-222)||(15609642-15609851)
[»] chr3 (7 HSPs)
chr3 (14-219)||(20684892-20685097)
chr3 (14-194)||(53580770-53580956)
chr3 (14-222)||(8726378-8726585)
chr3 (14-222)||(9078265-9078472)
chr3 (166-219)||(4136023-4136076)
chr3 (147-219)||(52586052-52586124)
chr3 (22-104)||(4135902-4135984)
[»] chr5 (2 HSPs)
chr5 (14-219)||(17237868-17238075)
chr5 (14-217)||(32296282-32296477)
[»] chr4 (1 HSPs)
chr4 (14-215)||(48026530-48026731)
[»] scaffold0913 (1 HSPs)
scaffold0913 (14-114)||(3061-3160)
[»] scaffold0898 (1 HSPs)
scaffold0898 (14-114)||(2441-2540)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 32922561 - 32922769
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  32922561 aagaatattatcttcaaagcattacacgatttatctaaggaagatgtgcctttattttgttgtgtgttgtggagtatttgaaaacaaagaaacaatagag 32922660  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  32922661 tatgaaatgaggtagttgatgcttaagtatatgttgtggagagagtaaaatctatgtttcatgattggtaagatgcatgtaagatttgtaatacatcatg 32922760  T
Q  214 tgcacaacc 222  Q
    |||||||||    
T  32922761 tgcacaacc 32922769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 24428243 - 24428069
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    ||||||||||| |||||| ||||||| ||||||||| ||||||||| | ||||||||||||  |||||||||||||| || |||||||||||||||| ||    
T  24428243 aagaatattattttcaaagcattacatgatttatctaaggaagatgcggctttattttgtt--gtgttgtggagtatctgaaaacaaagaaacaataaag 24428146  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgca 190  Q
    | || |||||||||||||||||| |||| | |||||| ||||||  |||| ||||| ||||||| |  |||||||||    
T  24428145 tgtggaatgaggtagttgatgctaaagtttatgttgtggagagaataaaagctatgcttcatgactaacaagatgca 24428069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 42131576 - 42131779
Alignment:
Q  17 aatattatcttcaaatcattacacgatttatctcaggaa-gatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagta 115  Q
    |||||||| ||||||  |||||| ||||||||| || || |||| | |||||||||| | ||||||||||| ||| ||||||||||||||||| | |||     
T  42131576 aatattattttcaaagtattacatgatttatctaagaaaagatggggctttattttgatgtgtgttgtggaatatgtggaaacaaagaaacaacaaagtg 42131675  T
Q  116 tgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtg 215  Q
    || ||||||||| ||||| || || | | |||||| ||||||| |||| ||||| ||||||||||||   ||||||||| | |||| |||||||| ||||    
T  42131676 tggaatgaggtaattgatactcaattttatgttgtggagagagcaaaaactatgcttcatgattggc---atgcacgtaggttttgcaatacatcttgtg 42131772  T
Q  216 cacaacc 222  Q
    |||||||    
T  42131773 cacaacc 42131779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 32109891 - 32109995
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| ||||||| ||||||||  |||||||||   ||||| |||||  |||||||| | |||| | |||||||||||||||  |||    
T  32109891 aagaatattatcttcaaagcattacaagatttatccaaggaagatgcaactttaatttgt--tgtgttgtagtgtatctagaaacaaagaaacaaccgag 32109988  T
Q  114 tatgaaa 120  Q
    |||||||    
T  32109989 tatgaaa 32109995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 39220485 - 39220535
Alignment:
Q  83 tggagtatttggaaacaaagaaacaatagagtatgaaatgaggtagttgat 133  Q
    ||||||||||||||||||||| ||||||  || || |||||||||||||||    
T  39220485 tggagtatttggaaacaaagatacaataaggtttggaatgaggtagttgat 39220535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 44021851 - 44021889
Alignment:
Q  184 agatgcacgtaagatttgtaatacatcatgtgcacaacc 222  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  44021851 agatgcacgtaggatttgtaatacatcttgtgcacaacc 44021889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 5848620 - 5848825
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| ||||||| ||||||||| | || ||||   |||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  5848620 aagaatattatcttcaaagcattacatgatttatctaatgacgatgcatctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacagag 5848719  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | |||||||||||| ||||||||  ||| | |||||| ||||||| ||||  |||| ||||||||||||||||||||| || ||||||||||||||| ||    
T  5848720 tgtgaaatgaggtaattgatgctccagtttatgttgtcgagagagcaaaagttatgcttcatgattggcaagatgcacataggatttgtaatacatcttg 5848819  T
Q  214 tgcaca 219  Q
    ||||||    
T  5848820 tgcaca 5848825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 33171525 - 33171318
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| | ||||| ||||||||| |||||||||||  ||| ||||| | ||||||||||||||| || |||||||||| ||| | ||    
T  33171525 aagaatattatcttcaaagccttacatgatttatctaaggaagatgtggttttgttttgctgtgtgttgtggagtatctgaaaacaaagaagcaaca-ag 33171427  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | || |||| |||| ||||| || || | | |||||||||||||| |||| |||||||||||| ||| |||||||| | || ||||| ||||||| | ||    
T  33171426 tgtggaatggggtaattgatactcaactttatgttgttgagagagtaaaaactatgtttcatggttgacaagatgctcataggatttataatacaacttg 33171327  T
Q  214 tgcacaacc 222  Q
    |||| ||||    
T  33171326 tgcataacc 33171318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 15746191 - 15745983
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatt---tatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaata 110  Q
    ||||||||||| |||||| || |||| ||||   ||||| | |||||||   |||||||||||| ||||||||||| ||| ||||||||||||||||| |    
T  15746191 aagaatattattttcaaagcagtacatgattatttatctaatgaagatgcaactttattttgttgtgtgttgtggaatatatggaaacaaagaaacaaca 15746092  T
Q  111 gagtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatc 210  Q
      || |  ||||||||| |||||  | |||  | |||||||||||||| |||| |||||||||||| ||||||||||||||||| | || ||||||| ||    
T  15746091 acgtgtagaatgaggtaattgatattaaagcctatgttgttgagagagcaaaaactatgtttcatgcttggcaagatgcacgtaggtttcgtaatacttc 15745992  T
Q  211 atgtgcaca 219  Q
     ||||||||    
T  15745991 ttgtgcaca 15745983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 18580129 - 18579970
Alignment:
Q  33 cattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagtatgaaatgaggtagttga 132  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||| | ||| || | ||||||| ||||    
T  18580129 cattacaagatttatctaaggaagatgtggctttattttgttatgtgttgtggagtatatgcaaacaaagaatcaacaaagtgtggagtgaggtaattga 18580030  T
Q  133 tgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgta 194  Q
    | || |||| | |||||| |||  | |||| | |||| ||||||||||||||||||||||||    
T  18580029 tactcaagtttatgttgtggag-cacaaaagt-tatgcttcatgattggcaagatgcacgta 18579970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 5509637 - 5509802
Alignment:
Q  42 atttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagtatgaaatgaggtagttgatgcttaagt 141  Q
    |||||||| ||||||||| | |||||||||||| ||||||||| ||||| || |||||||||||||  ||||| || ||||||||| | ||| || ||||    
T  5509637 atttatctaaggaagatgcgtctttattttgttgtgtgttgtgaagtatctgaaaacaaagaaaca--agagtgtggaatgaggtaatagattctcaagt 5509734  T
Q  142 atctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacat 209  Q
     | |||||||||||||| |||| ||||||||||  |||||||||||  | ||| ||||||| ||||||    
T  5509735 ttatgttgttgagagagcaaaaactatgtttcagaattggcaagatataggtaggatttgtgatacat 5509802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 40492694 - 40492559
Alignment:
Q  79 gttgtggagtatttggaaacaaagaaacaatagagtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgat 178  Q
    |||||||||||| || |||||||||||||| |||  |||   ||||||| ||||||||  | | | |||||| |||||||| |||  |||| || |||||    
T  40492694 gttgtggagtatatgaaaacaaagaaacaacaga--atg---tgaggtaattgatgctccattttatgttgtggagagagagaaaattatgcttaatgat 40492600  T
Q  179 tggcaagatgcacgtaagatttgtaatacatcatgtgcaca 219  Q
    |||||||||||||||| ||||||||||||| | ||||||||    
T  40492599 tggcaagatgcacgtaggatttgtaatacaccttgtgcaca 40492559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 19051249 - 19051314
Alignment:
Q  145 tgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatc 210  Q
    |||||||||||||| ||||  |||| |||||||||| |||||||| |||| |||||||||||||||    
T  19051249 tgttgttgagagagcaaaagttatgcttcatgattgacaagatgctcgtaggatttgtaatacatc 19051314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 36098451 - 36098483
Alignment:
Q  174 atgattggcaagatgcacgtaagatttgtaata 206  Q
    ||||||||||||||||||||| |||||||||||    
T  36098451 atgattggcaagatgcacgtaggatttgtaata 36098483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 17834793 - 17834588
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| ||| ||| ||||||||| |||| ||||   |||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  17834793 aagaatattatcttcaaagcatcacaggatttatctaaggacgatgcagctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaagagag 17834694  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | || ||||||||| ||||||||  ||| | |||||| ||||||| ||||  |||| ||||||||||||||||||||| || ||||||||||||||| ||    
T  17834693 tgtggaatgaggtaattgatgctccagtgtatgttgtcgagagagtaaaagttatgcttcatgattggcaagatgcacataggatttgtaatacatcttg 17834594  T
Q  214 tgcaca 219  Q
    ||||||    
T  17834593 tgcaca 17834588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 10259916 - 10260124
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||| ||||||||||  ||||||| ||||||||| |||| |||||  |||||||||||| ||||||||||||||| ||||||||||||||||| | ||    
T  10259916 aagaatcttatcttcaatgcattacatgatttatctaaggacgatgtaactttattttgttctgtgttgtggagtatatggaaacaaagaaacaacaaag 10260015  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | || ||||||||| ||||| ||  ||| | |||||| ||||||| ||||  |||| || ||||||||||||||||||||| ||||||||||||||| ||    
T  10260016 tgtggaatgaggtaattgatcctccagtttatgttgtcgagagagcaaaagttatgctttatgattggcaagatgcacgtaggatttgtaatacatcttg 10260115  T
Q  214 tgcacaacc 222  Q
    |||||||||    
T  10260116 tgcacaacc 10260124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 8783018 - 8783214
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgt--tgtggagtatttggaaacaaagaaacaatag 111  Q
    ||||||||||||||| || ||||| | |||||||   ||||||||| | ||||||||| |  |||||  |||||||||| | ||||||||||||||| ||    
T  8783018 aagaatattatcttctaagcattaaaagatttattcaaggaagatgaggctttattttttgctgtgtgctgtggagtatctagaaacaaagaaacaacag 8783117  T
Q  112 agtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaataca 208  Q
    ||| || || |||||| |||||||| |||| | |||||| |||||||||||| ||||| ||||||| |||||||||||| ||| |||||||||||||    
T  8783118 agtgtggaaagaggtaattgatgctcaagtttatgttgtggagagagaaaaagctatgcttcatgaatggcaagatgcatgtacgatttgtaataca 8783214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 9605408 - 9605330
Alignment:
Q  144 ctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcacaacc 222  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||  |||| ||||| ||||||||| |||||||||||    
T  9605408 ctgttgttgagagagcaaaagctatgattcatgattggcaagatgttcgtaggatttataatacatcttgtgcacaacc 9605330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 16912787 - 16912903
Alignment:
Q  17 aatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagtat 116  Q
    ||||||||||| ||| |||| ||| |||||||| || |||| ||| ||||| |||| | |||||||| |||||| |||||||||| |||||| | ||| |    
T  16912787 aatattatcttgaaagcattgcacaatttatctaagaaagacgtggcttta-tttgctgtgtgttgtagagtatctggaaacaaataaacaacatagtgt 16912885  T
Q  117 gaaatgaggtagttgatg 134  Q
    | ||||||||| ||||||    
T  16912886 ggaatgaggtaattgatg 16912903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 16912763 - 16912677
Alignment:
Q  121 tgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatac 207  Q
    ||||||| |||||||| |||| | |||| | ||||||| |||| ||||| |||||||||| ||| ||||| ||| ||||||||||||    
T  16912763 tgaggtaattgatgctcaagtttatgttatggagagagcaaaagctatgcttcatgattgacaaaatgcatgtaggatttgtaatac 16912677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 13596408 - 13596613
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    ||||||||||||||||||  |||||| ||||||||| |||| ||||   |||||||||||| ||||||||||| ||| ||||||||||||||||| ||||    
T  13596408 aagaatattatcttcaaagtattacatgatttatctaaggatgatgcaactttattttgttgtgtgttgtggactatgtggaaacaaagaaacaacagag 13596507  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | ||  |||||||| ||||||||  ||| | ||||||||||||||||||   |||| |||||||||||||||||||| ||| ||||||||||||||| ||    
T  13596508 tgtgggatgaggtaattgatgctccagtttatgttgttgagagagaaaatgttatgcttcatgattggcaagatgcatgtaggatttgtaatacatcttg 13596607  T
Q  214 tgcaca 219  Q
    ||||||    
T  13596608 tgcaca 13596613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 23040687 - 23040482
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    ||||||||||| |||||| ||||||| ||||||||| | |||||||   |||||||||||| ||||||||||||||| ||||||||||||||||| | ||    
T  23040687 aagaatattattttcaaagcattacaggatttatctaatgaagatgcagctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacaaag 23040588  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | || ||||||||| ||||| || |||| | |||| | ||||||| ||||  |||  |||||||||||||||||||||||| | || |||||||||| ||    
T  23040587 tgtggaatgaggtaattgatactcaagtctatgttatggagagagcaaaagttatccttcatgattggcaagatgcacgtaggtttcgtaatacatcttg 23040488  T
Q  214 tgcaca 219  Q
    ||||||    
T  23040487 tgcaca 23040482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 48858930 - 48859138
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||| ||||||||||||| ||||||| ||||||||| |||||||||   ||||||||   | |||||||||||||||||| ||||||||||| || |||     
T  48858930 aagagtattatcttcaaagcattacatgatttatctaaggaagatgcaactttatttgactgtgtgttgtggagtatttgaaaacaaagaaaaaacagat 48859029  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
      || ||||||||| |||||||| |||| | |||||||||||||| ||||  |||| ||||||||||||| |||||| ||| ||||||||||||||| ||    
T  48859030 cgtggaatgaggtaattgatgctcaagtttatgttgttgagagaggaaaaattatgcttcatgattggcatgatgcaagtaggatttgtaatacatcttg 48859129  T
Q  214 tgcacaacc 222  Q
    |||| ||||    
T  48859130 tgcataacc 48859138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 22910661 - 22910866
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    ||||||||||| |||||| ||||||| ||||||||| | |||||||   |||||||||||| ||||||||||||||| | ||||||||||||||| | ||    
T  22910661 aagaatattattttcaaagcattacatgatttatctaatgaagatgcagctttattttgttgtgtgttgtggagtatatagaaacaaagaaacaacaaag 22910760  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | || ||||||||| ||||| || |||  | ||| || ||||||| |||| ||||| |||||||||||||||||||||||| | || ||||||| || ||    
T  22910761 tgtggaatgaggtaattgatactcaagcctatgtagtggagagagcaaaaactatgcttcatgattggcaagatgcacgtaggtttcgtaatacttcttg 22910860  T
Q  214 tgcaca 219  Q
    ||||||    
T  22910861 tgcaca 22910866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 26754380 - 26754561
Alignment:
Q  23 atcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagagtatgaaatg 122  Q
    ||||||||| ||||||| ||||||||| | |||||||   |||||||||||| ||| |||||| |||| | |||||||||||| || ||||| || ||||    
T  26754380 atcttcaaagcattacaagatttatctaaagaagatgcagctttattttgttgtgtattgtggcgtatctagaaacaaagaaataacagagtgtggaatg 26754479  T
Q  123 aggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaa 204  Q
    ||||| |||||| | |||| | |||||| ||||||| ||||  || | |||||||||| ||||||||||||| |||||||||    
T  26754480 aggtaattgatgatcaagtttatgttgtggagagagcaaaagttacgcttcatgattgacaagatgcacgtaggatttgtaa 26754561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 15609642 - 15609851
Alignment:
Q  13 gaagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaataga 112  Q
    |||||||| ||| |||||| ||||||| ||||||||| |||| |||  | |||||||||||| |||||||| |||||| |||||| | |||||||| | |    
T  15609642 gaagaatactatgttcaaagcattacaagatttatctaaggacgatacgactttattttgttgtgtgttgtagagtatctggaaatagagaaacaacaaa 15609741  T
Q  113 gtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcat 212  Q
    || || |||||||||||||||||| |||| | |||||| ||||||| ||||  |||| |||||||||||||||||||||||  ||||| ||||||||| |    
T  15609742 gtgtggaatgaggtagttgatgctcaagtttatgttgtcgagagagtaaaagttatgcttcatgattggcaagatgcacgttggatttttaatacatctt 15609841  T
Q  213 gtgcacaacc 222  Q
    ||||||||||    
T  15609842 gtgcacaacc 15609851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 20684892 - 20685097
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    ||||||||||| |||||| ||||||| ||||||||| ||||||||| | |||||||||| | |||||| |||||||| |||||| |||||||||||| ||    
T  20684892 aagaatattattttcaaagcattacaagatttatctaaggaagatgcgactttattttgctgtgtgttatggagtatatggaaataaagaaacaataaag 20684991  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | || ||||||||| |||||  | |||| | |||||| ||||||| |||| ||||| |||||||||||||||||||||||| | || |||||||||  ||    
T  20684992 tgtggaatgaggtaattgatattcaagtttatgttgtggagagagcaaaaactatgcttcatgattggcaagatgcacgtaggtttcgtaatacattttg 20685091  T
Q  214 tgcaca 219  Q
    ||||||    
T  20685092 tgcaca 20685097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 53580770 - 53580956
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttat------ctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaaca 107  Q
    ||||||||||| |||||| ||||||| |||||||      || | ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  53580770 aagaatattattttcaaagcattacaggatttattattttctaatgaagatgtggctttattttgttgtgtgttgtggagtatatggaaacaaagaaaca 53580869  T
Q  108 atagagtatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgta 194  Q
    | | ||| || ||||||||| ||||| || |||| | |||||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  53580870 acaaagtgtggaatgaggtaattgatactcaagtttatgttgtggagagagcaaaagctatgcttcatgattggcaagatgcacgta 53580956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 8726378 - 8726585
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    ||||||||||||||||||  |||| | ||||||  | ||||||||| | || ||||||||| ||||||||||| ||| | |||||||| |||||| || |    
T  8726378 aagaatattatcttcaaaatattaaatgatttaaataaggaagatgcggctctattttgttgtgtgttgtggattatctagaaacaaataaacaacagtg 8726477  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatct-atgtttcatgattggcaagatgcacgtaagatttgtaatacatcat 212  Q
    | ||||  |||||| |||||| | | || | ||||||||||||| |||||  | ||| ||||||| |||||||||||||||| |||||||||||||||      
T  8726478 t-tgaac-gaggtaattgatgttcatgtttgtgttgttgagagaaaaaaaagttatgcttcatgactggcaagatgcacgtaggatttgtaatacatctc 8726575  T
Q  213 gtgcacaacc 222  Q
    ||||||||||    
T  8726576 gtgcacaacc 8726585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 9078265 - 9078472
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    ||||||||||||||||||  |||| | ||||||  | ||||||||| | || ||||||||| ||||||||||| ||| | |||||||| |||||| || |    
T  9078265 aagaatattatcttcaaaatattaaatgatttaaataaggaagatgcggctctattttgttgtgtgttgtggattatctagaaacaaataaacaacagtg 9078364  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatct-atgtttcatgattggcaagatgcacgtaagatttgtaatacatcat 212  Q
    | ||||  |||||| |||||| | | || | ||||||||||||| |||||  | ||| ||||||| |||||||||||||||| |||||||||||||||      
T  9078365 t-tgaac-gaggtaattgatgttcatgtttgtgttgttgagagaaaaaaaagttatgcttcatgactggcaagatgcacgtaggatttgtaatacatctc 9078462  T
Q  213 gtgcacaacc 222  Q
    ||||||||||    
T  9078463 gtgcacaacc 9078472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 4136023 - 4136076
Alignment:
Q  166 tatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcaca 219  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||    
T  4136023 tatgtttcatgattggcaagatgctcgtaagatttgtaatatatcttgtccaca 4136076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 52586124 - 52586052
Alignment:
Q  147 ttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatgtgcaca 219  Q
    |||| ||||||| ||||  |||| || |||||||| |||||||||||| ||||||||||||||| ||||||||    
T  52586124 ttgtcgagagagcaaaagttatgattgatgattggtaagatgcacgtaggatttgtaatacatcttgtgcaca 52586052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 4135902 - 4135984
Alignment:
Q  22 tatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaa 104  Q
    |||||||||| | ||||| | ||||||| |||||||||    ||||||| ||| ||||||||| ||||| |||||||||||||    
T  4135902 tatcttcaaagccttacatggtttatctaaggaagatgccattttatttggttgtgtgttgtgtagtatctggaaacaaagaa 4135984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 17238075 - 17237868
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| ||||||| ||||||||| || | ||||   |||||||||||| | ||||||||||||| ||||||||||||||||| ||||    
T  17238075 aagaatattatcttcaaaacattacaagatttatctaagaaggatgcaactttattttgttgtatgttgtggagtatatggaaacaaagaaacaacagag 17237976  T
Q  114 tatgaaatgaggtagttgatgc--ttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatca 211  Q
    | || ||||||||| |||||||  |  | | | |||||||||||||| ||||  |||| |||||||||| ||||||||||||| |||||||||||||||     
T  17237975 tgtggaatgaggtaattgatgcgatccattttatgttgttgagagagcaaaagttatgcttcatgattgacaagatgcacgtaggatttgtaatacatct 17237876  T
Q  212 tgtgcaca 219  Q
    ||||||||    
T  17237875 tgtgcaca 17237868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 32296477 - 32296282
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    ||||||||||| |||||| ||||||| ||||||||| ||||||||| | |||||||||| | ||||||||||||||| ||||||| |||||| || | ||    
T  32296477 aagaatattattttcaaagcattacaggatttatctaaggaagatgcggctttattttgctgtgtgttgtggagtatatggaaac-aagaaataacaaag 32296379  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | |  ||||||||| ||||  || |||| | | ||||       |||||| ||||| ||||||||||||||||||||| || | || |||||||||| ||    
T  32296378 tctagaatgaggtaattgagactcaagtttatattgt-------gaaaaaactatgcttcatgattggcaagatgcacataggtttcgtaatacatcttg 32296286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 48026731 - 48026530
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| ||||||| ||||||||| |||| ||||   |||||||||||| ||||||||||||||| |||||||||||||||||   ||    
T  48026731 aagaatattatcttcaaagcattacatgatttatctaaggacgatgcatctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacgaag 48026632  T
Q  114 tatgaaatgaggtagttgatgcttaagtatctgttgttgagagagaaaaatctatgtttcatgattggcaagatgcacgtaagatttgtaatacatcatg 213  Q
    | || ||||||||| ||||||||  | | | |||||| ||||||| | ||  |||| | |||||||| ||||||||||||| ||||||||||||||| ||    
T  48026631 tgtggaatgaggtaattgatgctccaatttatgttgtcgagagagcataagttatggtccatgattgacaagatgcacgtaggatttgtaatacatcttg 48026532  T
Q  214 tg 215  Q
    ||    
T  48026531 tg 48026530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 3061 - 3160
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| |||| | ||||||| | ||||| || |||||||||||||| ||||    
T  3061 aagaatattatcttcaaaacattacaagatttatctaaggaagatgtggcttta-tttgatttgtgttgcgcagtatctgaaaacaaagaaacaacagag 3159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 2540 - 2441
Alignment:
Q  14 aagaatattatcttcaaatcattacacgatttatctcaggaagatgtgcctttattttgttatgtgttgtggagtatttggaaacaaagaaacaatagag 113  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| |||| | ||||||| | ||||| || |||||||||||||| ||||    
T  2540 aagaatattatcttcaaaacattacaagatttatctaaggaagatgtggcttta-tttgatttgtgttgcgcagtatctgaaaacaaagaaacaacagag 2442  T

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