View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1245_high_49 (Length: 252)
Name: NF1245_high_49
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_49 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 44475392 - 44475635
Alignment:
| Q |
9 |
agcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaattatttaatctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44475392 |
agcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaattatttaatctt |
44475491 |
T |
|
| Q |
109 |
tataaaaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttgtttcaactattttatagagttgatgggcttcaagtgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44475492 |
tataaaaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttgtttcaactattttatagagttgatgggcttcaagtgt |
44475591 |
T |
|
| Q |
209 |
tttaaaaaatgtgagcagacggtttgactgcttgattcccaaat |
252 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
44475592 |
tttaaaaaatgtgcgcagacggtttgactgcctgattcccaaat |
44475635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 39849205 - 39849370
Alignment:
| Q |
12 |
agagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaattatttaatctttat |
111 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
39849205 |
agagttcgtgcatatgggcaattttgaagaccatcaaagctattatatgaatcttaatctgc-----aacttggcatcaggtaaattatttgatctttta |
39849299 |
T |
|
| Q |
112 |
aa-----aaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttgtttcaact |
179 |
Q |
| |
|
|| |||||||||| ||||||||||| | |||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
39849300 |
aaaaattaaagtattatggaaaatttgatatagtattcgtggttaccac--tattatcacctttctttcaact |
39849370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 38633481 - 38633586
Alignment:
| Q |
12 |
agagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaattatttaatctttat |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| || ||||||| |
|
|
| T |
38633481 |
agagatcgtgtatatgggcctttttgaagaccatcaaagctagtatctgaatcttaatctgc-----aacttggcaacaggtaaattacttgatctttaa |
38633575 |
T |
|
| Q |
112 |
aaaaagtatta |
122 |
Q |
| |
|
||||||||||| |
|
|
| T |
38633576 |
aaaaagtatta |
38633586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 38453297 - 38453204
Alignment:
| Q |
79 |
aacttggcatcaggtaaattatttaatctttataa----aaagtattatagaaaatttgattttgtattcatggttaccactatattatcaccttt |
170 |
Q |
| |
|
|||||||||||||||||||||||| || ||| || ||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
38453297 |
aacttggcatcaggtaaattatttgattttttgaacaaaaaactattatggaaaatttgatatagtattcatggttaccac--tattatcaccttt |
38453204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 7045491 - 7045435
Alignment:
| Q |
22 |
tatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaactt |
78 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7045491 |
tatatggccattttagaagaccatcaaagctattatctgaatcttaatttgcaactt |
7045435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University