View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_50 (Length: 251)
Name: NF1245_high_50
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 30342456 - 30342580
Alignment:
| Q |
3 |
ctcagctagtaaagtaaaagttcttataacaacattgaatataacctactaaacaaaaagagtaacagaaactaaagaaagaatgtaaacatcaaattac |
102 |
Q |
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| T |
30342456 |
ctcagctagtaaagtaaaagttcttataacaacattgaatataacctactaaagaaaaaaagtaacagaaactaaagaaagaatgtaaacatcaaattac |
30342555 |
T |
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| Q |
103 |
ctgatttccgaagaatttcgtaaag |
127 |
Q |
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| T |
30342556 |
ctgatttccgaggaatttcgcaaag |
30342580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 30343773 - 30343865
Alignment:
| Q |
130 |
cataccatgattcgcaacactgatttccctacaataacaggacattcagtactatatgattgaaaagaaatagttgtgaacttctgcgaaaga |
222 |
Q |
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| T |
30343773 |
cataccatgattagcaacactgatttccctacaataagaggacattcagtactatatgattgaaaagaaatagttgtgaacttctgcgaaaga |
30343865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 29220876 - 29220971
Alignment:
| Q |
32 |
caacattgaatataacctactaaacaaaaagagtaacagaaactaaagaaagaatgtaaacatcaaattacctgatttccgaagaatttcgtaaag |
127 |
Q |
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| T |
29220876 |
caacattgactataacctactaaagaaaaagagtaacaaaaacttaagaaagaacgtaagcatcaaattacctgatttctggggaatttcgcaaag |
29220971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 29221016 - 29221070
Alignment:
| Q |
130 |
cataccatgattcgcaacactgatttccctacaataacaggacattcagtactat |
184 |
Q |
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| T |
29221016 |
cataccatgattagcaacaatgatttccctacaataacaggacattcattactat |
29221070 |
T |
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