View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1245_high_51 (Length: 251)
Name: NF1245_high_51
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 16790294 - 16790102
Alignment:
| Q |
48 |
aatagttaggtagaagtccacaattaaataaaataaggtatcatagatggtaatgacgatttctcctacaaaggaagttacgtacaattatcccttttga |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16790294 |
aatagttaggtagaagtccacaattaaataaaataaggtatcatggatggtaatgacgatttctcctacaaaggaagttacgtacaattatcccttttga |
16790195 |
T |
|
| Q |
148 |
aacgtatcaaattactatacgtattagttaaaagactgcattaatttttctattagnnnnnnnaaaacttattcaataaatcgtttgaccttt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
16790194 |
aacgtatcaaattactatacgtattagttaaaagactgcattaatttttatattactttttttaaaacttattcaataaatcatttgaccttt |
16790102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University