View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_high_9 (Length: 491)
Name: NF1245_high_9
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Original strand, 8755317 - 8755762
Alignment:
| Q |
7 |
tgacaaattttaaaattctgctacactataatgccactactactatggtcactatttgatataaacaaacatatccaatgaaatttcatcgattaaacag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8755317 |
tgacaaattttaaaattctgctacactataatgccactactactatggtcgctatttgatataaacaaacatatccaatgaaatttcatcgattaaacag |
8755416 |
T |
|
| Q |
107 |
tttcactccatgttatttccaagattcaatacaaacaatgaaatcaaatc-catttcaatttggattcaatacaaacaaaattaacactaacctgtgacg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
8755417 |
tttcactccatgttatttccaagattcaatacaaacaatgaaatcaaatcacttttcaatttcgattcaatacaaacaaaatcaacactaacctgtgacg |
8755516 |
T |
|
| Q |
206 |
gacgggaccctgaaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatcttctcgatatacccatggata |
305 |
Q |
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| T |
8755517 |
gac-----cctgaaaatcaacactaccaatctacctaatcttctccttcccactgatcctatcagcagcctccttaatctcctcaatatacccatcaata |
8755611 |
T |
|
| Q |
306 |
ggcggcgtaagcgttgccataaacatattcatcggaaaaggcgtcaaatccggcaccaaagcagtttccttcaaacccccaggcaaagcttcaatagcct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8755612 |
ggcggcgtaagcgttgccataaacatattcatcggaaacggcgtcaaatccggcaccaaagcagtttccttcaaacccccaggcaaagcttcaatagcct |
8755711 |
T |
|
| Q |
406 |
cctttttcatcctcaaaagattcgtctccgccgcttgtctcgccctatgct |
456 |
Q |
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| T |
8755712 |
tctttttcatcctcaaaagatttgtctctgccgcttgtctcgccctatgct |
8755762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 168 - 456
Target Start/End: Complemental strand, 10507057 - 10506774
Alignment:
| Q |
168 |
ggattcaatacaaacaaaattaacactaacctgtgacggacgggaccctgaaaatcaacactaccaatctacctaatcttctccttcccactgatcctat |
267 |
Q |
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|||||||||||||||||||| || |||||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10507057 |
ggattcaatacaaacaaaatcaatactaacctgtgacgaac-----catcaaaatcaacactaccaatctacctaatcttctccttcccactgatcctat |
10506963 |
T |
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| Q |
268 |
cagcagcctccttaatcttctcgatatacccatggataggcggcgtaagcgttgccataaacatattcatcggaaaaggcgtcaaatccggcaccaaagc |
367 |
Q |
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| T |
10506962 |
cagcagcctccttaatcttctcaatatacccatcaataggcggtgtaagcgtcgccataaacctattcaccggaaatggagtcaaatccggcaccaaagc |
10506863 |
T |
|
| Q |
368 |
agtttccttcaaacccccaggcaaagcttcaatagcctcctttttcatcctcaaaagattcgtctccgccgcttgtctcgccctatgct |
456 |
Q |
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| T |
10506862 |
agcttccttcaaacccccaggcaaagcttcaatagcctcctttttcatcatcaaaagattagtctccgccgcttgtctcgccctatgct |
10506774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 10509972 - 10509890
Alignment:
| Q |
170 |
attcaatacaaacaaaattaacactaacctgtgacggacgggaccctgaaaatcaacactaccaatctacctaatcttctccttccca |
257 |
Q |
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|||||||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10509972 |
attcaatacaaacaaaatcaacactaacctgtgacaaac-----cctcaaaatcaacactaccaatctacctaatcttctccttccca |
10509890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 10507124 - 10507041
Alignment:
| Q |
63 |
tgatataaacaaacatatccaatgaaatttcatcgattaaa--cagtttcactccatgttatttccaagattcaatacaaacaa |
144 |
Q |
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|||||||| |||||||||||||||| |||||||| |||||| |||||||||||||| |||||| || |||||||||||||||| |
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| T |
10507124 |
tgatataagcaaacatatccaatgatatttcatcaattaaagacagtttcactccatcttatttgcaggattcaatacaaacaa |
10507041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 10508180 - 10508148
Alignment:
| Q |
2 |
aactatgacaaattttaaaattctgctacacta |
34 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
10508180 |
aactatgacaatttttaaaattctgctacacta |
10508148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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