View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_low_1 (Length: 834)

Name: NF1245_low_1
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_low_1
NF1245_low_1
[»] chr2 (11 HSPs)
chr2 (274-789)||(41093764-41094283)
chr2 (334-542)||(35950387-35950595)
chr2 (52-217)||(41093601-41093766)
chr2 (334-489)||(8050839-8050995)
chr2 (334-486)||(8055392-8055545)
chr2 (334-486)||(36670503-36670660)
chr2 (334-486)||(36675051-36675208)
chr2 (334-443)||(12999512-12999622)
chr2 (333-411)||(6463506-6463584)
chr2 (333-389)||(13271075-13271132)
chr2 (403-490)||(34590284-34590370)
[»] chr3 (11 HSPs)
chr3 (334-608)||(39399006-39399279)
chr3 (378-595)||(38175681-38175898)
chr3 (333-491)||(9105274-9105433)
chr3 (333-489)||(11004404-11004561)
chr3 (334-443)||(9697586-9697697)
chr3 (334-486)||(21847109-21847264)
chr3 (334-486)||(21850199-21850354)
chr3 (334-486)||(54171924-54172081)
chr3 (334-486)||(54167344-54167501)
chr3 (334-486)||(43547723-43547878)
chr3 (334-396)||(43554292-43554355)
[»] chr1 (6 HSPs)
chr1 (334-542)||(10504436-10504644)
chr1 (333-437)||(16588532-16588636)
chr1 (334-486)||(39793831-39793984)
chr1 (334-395)||(26311522-26311583)
chr1 (334-395)||(26316013-26316074)
chr1 (334-443)||(43591869-43591978)
[»] chr5 (20 HSPs)
chr5 (333-546)||(10274545-10274758)
chr5 (334-546)||(10277204-10277416)
chr5 (333-486)||(30695292-30695446)
chr5 (333-486)||(7103943-7104101)
chr5 (333-437)||(40371789-40371893)
chr5 (334-486)||(7099374-7099531)
chr5 (334-486)||(12018731-12018888)
chr5 (334-486)||(12023289-12023446)
chr5 (334-486)||(16794108-16794265)
chr5 (334-486)||(16798669-16798826)
chr5 (334-443)||(32486033-32486143)
chr5 (334-442)||(19502307-19502417)
chr5 (334-411)||(40367680-40367757)
chr5 (334-423)||(37682036-37682127)
chr5 (333-411)||(36632313-36632391)
chr5 (354-436)||(43384972-43385054)
chr5 (382-491)||(20830327-20830437)
chr5 (334-491)||(26336804-26336964)
chr5 (334-393)||(37658732-37658792)
chr5 (382-437)||(20808694-20808749)
[»] chr4 (15 HSPs)
chr4 (334-585)||(31359151-31359400)
chr4 (334-608)||(31354678-31354949)
chr4 (334-542)||(49274461-49274668)
chr4 (333-542)||(41884924-41885132)
chr4 (334-491)||(8892619-8892778)
chr4 (334-486)||(53722007-53722160)
chr4 (334-491)||(10317062-10317220)
chr4 (334-443)||(31670090-31670200)
chr4 (334-486)||(3770842-3770999)
chr4 (334-486)||(44147023-44147180)
chr4 (334-486)||(44151558-44151715)
chr4 (334-443)||(27186142-27186255)
chr4 (341-423)||(43683731-43683813)
chr4 (368-491)||(53785880-53786004)
chr4 (334-392)||(50628029-50628087)
[»] chr8 (18 HSPs)
chr8 (453-672)||(11032659-11032876)
chr8 (334-486)||(28644562-28644715)
chr8 (330-486)||(43812044-43812203)
chr8 (331-489)||(30410330-30410489)
chr8 (333-486)||(42234698-42234852)
chr8 (334-486)||(43807485-43807640)
chr8 (334-486)||(33071918-33072071)
chr8 (334-486)||(197684-197841)
chr8 (334-486)||(202202-202359)
chr8 (334-486)||(312521-312678)
chr8 (334-486)||(317039-317196)
chr8 (333-395)||(38757002-38757064)
chr8 (333-411)||(41945338-41945416)
chr8 (334-426)||(41949802-41949894)
chr8 (572-627)||(1291562-1291617)
chr8 (334-376)||(30405918-30405960)
chr8 (362-490)||(27435190-27435314)
chr8 (572-618)||(1286856-1286900)
[»] chr6 (10 HSPs)
chr6 (372-512)||(6440839-6440979)
chr6 (333-443)||(17096322-17096432)
chr6 (334-425)||(27552176-27552267)
chr6 (333-442)||(8320091-8320200)
chr6 (334-423)||(27574795-27574884)
chr6 (334-486)||(8315507-8315661)
chr6 (334-443)||(17895771-17895881)
chr6 (334-437)||(17779914-17780018)
chr6 (334-412)||(17886921-17887000)
chr6 (334-443)||(14531835-14531945)
[»] chr7 (11 HSPs)
chr7 (334-437)||(27761397-27761500)
chr7 (334-437)||(27756846-27756949)
chr7 (334-487)||(35705634-35705789)
chr7 (340-443)||(47419626-47419729)
chr7 (334-486)||(7940083-7940240)
chr7 (334-486)||(7944636-7944793)
chr7 (333-486)||(22901153-22901309)
chr7 (559-668)||(8675192-8675299)
chr7 (333-411)||(7466591-7466670)
chr7 (346-482)||(37355573-37355710)
chr7 (346-491)||(13828101-13828248)
[»] scaffold0440 (2 HSPs)
scaffold0440 (334-453)||(7506-7626)
scaffold0440 (334-486)||(2980-3137)
[»] scaffold0044 (2 HSPs)
scaffold0044 (334-486)||(44865-45022)
scaffold0044 (334-486)||(49445-49602)
[»] scaffold0006 (1 HSPs)
scaffold0006 (336-465)||(60171-60302)


Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 274 - 789
Target Start/End: Original strand, 41093764 - 41094283
Alignment:
Q  274 tgtattttcgtatttatttaatttgtttcaatgatacgcggatgtggatgacgtgacagttgttagtttgttttaattcaagtttagtttagtgataatc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  41093764 tgtattttcgtatttatttaatttgtttcaatgatacgcggatgtggatgacgtgacagttgttggtttgttttaattcaaatttagtttagtgataatc 41093863  T
Q  374 acaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagttagagattagctcataaggttagggtttgttacttagcttg 473  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41093864 acaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagttagagattagctcataaggttagggtttgttacttagcttg 41093963  T
Q  474 cacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttactacttcaatatacattcattttttcatcaatcacataacct 573  Q
     |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41093964 tacttcaagcaacctaatcaagtttgtgtatataagctaaactcttgtacatattttactacttcaatatacattcattttttcagcaatcacataacct 41094063  T
Q  574 ttctcttctctcaatttctctctaaattcacaaatacactaaaccagaaaaacc----ttataattatttcttgttgtttaagcttcatagttgcgctat 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| ||||||||    
T  41094064 ttctcttctctcaatttctctctaaattcacaaatacactaaaccagaaaaaccttaattataattatttcttgttgtttaagcttcatagctgcgctat 41094163  T
Q  670 caacagtatgatagtattcctcggatgcagagatgttcaacgtgatcttgttcatcaagaggaagagtgtgtacatcatgagcaacaggagattgaaaat 769  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094164 caacagtataatagtattcctcggatgcagagatgttcaacgtgatcttgttcatcaagaggaagagtgtgtacatcatgagcaacaggagattgaaaat 41094263  T
Q  770 cattcttatggaggaccatt 789  Q
    ||||||||||||||||||||    
T  41094264 cattcttatggaggaccatt 41094283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 334 - 542
Target Start/End: Complemental strand, 35950595 - 35950387
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  35950595 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagtt 35950496  T
Q  434 agagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttact 533  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||    
T  35950495 agagattagctcgtaaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatactttact 35950396  T
Q  534 acttcaata 542  Q
    |||||||||    
T  35950395 acttcaata 35950387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 41093601 - 41093766
Alignment:
Q  52 cccctaaacctacaatttaattgaactacttttgttacctcgtgtataaactgaaacatctttttctttccactttttcccattttacgtccaagttcat 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41093601 cccctaaacctacaatttaattgaactacttttgttacctcgtgtataaactgaaacatctttttctttccactttttcccattttacgtccaagttcat 41093700  T
Q  152 tgagcataaatgtgtctgaagaatcattttttctgaaaaactttgagtaagtttattgcaacgtgt 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  41093701 tgagcataaatgtgtctgaagaatcattttttctggaaaactttgagtaagtttgttgcaacgtgt 41093766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 334 - 489
Target Start/End: Original strand, 8050839 - 8050995
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    || ||||||||||||| |||||||||| || |||    
T  8050839 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgtt 8050938  T
Q  434 agagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaaccta 489  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||  ||||||||||||||    
T  8050939 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaaccta 8050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 8055392 - 8055545
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    || ||||||||||||| |||||| ||| || |||    
T  8055392 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgtt 8055491  T
Q  434 agagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||  |||||||||||    
T  8055492 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 8055545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 36670503 - 36670660
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  36670503 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36670602  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  36670603 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 36675051 - 36675208
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  36675051 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36675150  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  36675151 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 12999622 - 12999512
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||| | || ||||||||||||| |||||||||| || ||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 12999523  T
Q  433 tagagattagc 443  Q
    ||||| |||||    
T  12999522 tagaggttagc 12999512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 6463584 - 6463506
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 411  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||    
T  6463584 ttgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta 6463506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 13271132 - 13271075
Alignment:
Q  333 ttgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaat 389  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  13271132 ttgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaat 13271075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 490
Target Start/End: Original strand, 34590284 - 34590370
Alignment:
Q  403 agtttgttatgaattttgttacaaattagttagagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaa 490  Q
    |||||||||||||||| ||||||| || |||||||||||||  |||  ||||||||||||||  |||||||  ||| |||||||||||    
T  34590284 agtttgttatgaattt-gttacaagtttgttagagattagcatatagagttagggtttgttatatagcttgtgctttaagcaacctaa 34590370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 334 - 608
Target Start/End: Complemental strand, 39399279 - 39399006
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39399279 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 39399180  T
Q  434 agagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacata-ttttac 532  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||    
T  39399179 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatatttttac 39399080  T
Q  533 tacttcaatatacattcattttttcatcaatcacataacctttctcttctctcaatttctctcta-aattcacaaat 608  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  39399079 tacttcaatatacaatca-attttcatcaatcacataacctttctcttctctca--ttctctctataattcacaaat 39399006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 378 - 595
Target Start/End: Complemental strand, 38175898 - 38175681
Alignment:
Q  378 ttagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagttagagattagctcataaggttagggtttgttacttagcttgcact 477  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  38175898 ttagtggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagattagggtttgttacttagcttgtact 38175799  T
Q  478 tcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttactacttcaata-tacattcattttttcatcaatcacataacc-ttt 575  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||  || |||| |||||  |  |||||||||||||||||||| |||    
T  38175798 tcaagcaacctaaccaagtttgtatatataagctaaactcttgtacatttgttactttttaaatattacatcaa--ttttcatcaatcacataacctttt 38175701  T
Q  576 ctcttctctcaatttctctc 595  Q
    ||||||||||||| ||||||    
T  38175700 ctcttctctcaatctctctc 38175681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 333 - 491
Target Start/End: Original strand, 9105274 - 9105433
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| | || ||||||||||||| | |||||||| || ||    
T  9105274 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgt 9105373  T
Q  433 tagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaacctaac 491  Q
    ||||| ||| |  ||||| | ||| ||||||||| | |||||  ||||||||||||||||    
T  9105374 tagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaac 9105433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 333 - 489
Target Start/End: Complemental strand, 11004561 - 11004404
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| | || || ||||||||||  ||||||||| || ||    
T  11004561 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgt 11004462  T
Q  433 tagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaaccta 489  Q
    ||||| |||||  ||||| | ||| ||||||||| | | |||  ||||||||||||||    
T  11004461 tagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaaccta 11004404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 443
Target Start/End: Original strand, 9697586 - 9697697
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttag-attcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |  || ||||||||||||| |||||||||| || |    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  432 ttagagattagc 443  Q
    |||||| |||||    
T  9697686 ttagaggttagc 9697697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 21847109 - 21847264
Alignment:
Q  334 tgttagtttgtttt-aattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || | || ||||||||||||| |||||||||| || |    
T  21847109 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 21847208  T
Q  432 ttagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||  |||||||||||    
T  21847209 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 21847264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 21850199 - 21850354
Alignment:
Q  334 tgttagtttgtttt-aattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || | || ||||||||||||| |||||||||| || |    
T  21850199 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 21850298  T
Q  432 ttagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||  |||||||||||    
T  21850299 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 21850354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 54172081 - 54171924
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  54172081 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54171982  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  54171981 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 54167501 - 54167344
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  54167501 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54167402  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| ||| |  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  54167401 ttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 43547723 - 43547878
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcacatttag-attcagtttgttatgaattttgttacaaattag 431  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||| |  || ||||||||||||| |||||||||| || |    
T  43547723 tgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttg 43547822  T
Q  432 ttagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| ||| |  ||||| | ||| ||||||||| | |||||  |||||||||||    
T  43547823 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaac 43547878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 43554292 - 43554355
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcacattt 396  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||    
T  43554292 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattt 43554355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-99; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 334 - 542
Target Start/End: Original strand, 10504436 - 10504644
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10504436 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10504535  T
Q  434 agagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttact 533  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  10504536 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatattttact 10504635  T
Q  534 acttcaata 542  Q
    |||||||||    
T  10504636 acttcaata 10504644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 333 - 437
Target Start/End: Complemental strand, 16588636 - 16588532
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||||| || ||    
T  16588636 ttgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 16588537  T
Q  433 tagag 437  Q
    |||||    
T  16588536 tagag 16588532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 39793831 - 39793984
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  | || ||||||||||||| |||||||||| || |||    
T  39793831 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgtt 39793930  T
Q  434 agagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||  |||||||||||    
T  39793931 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 39793984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 26311522 - 26311583
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26311522 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacatt 26311583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 26316013 - 26316074
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26316013 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacatt 26316074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 43591978 - 43591869
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||   || ||||||||||||| ||||||||||  | |||    
T  43591978 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgtt 43591879  T
Q  434 agagattagc 443  Q
    |||| |||||    
T  43591878 agaggttagc 43591869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 6e-98; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 333 - 546
Target Start/End: Original strand, 10274545 - 10274758
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10274545 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 10274644  T
Q  433 tagagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttac 532  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||| ||    
T  10274645 tagagattagctcataaggttagggtttgttatttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatatttcac 10274744  T
Q  533 tacttcaatataca 546  Q
    ||||||||||||||    
T  10274745 tacttcaatataca 10274758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 334 - 546
Target Start/End: Original strand, 10277204 - 10277416
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10277204 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10277303  T
Q  434 agagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttact 533  Q
    |||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||  |||||||||||||||| |||||||||||||||| |||    
T  10277304 agagattagctcataaggttagggtttgttacttagcttgtattttaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatatttcact 10277403  T
Q  534 acttcaatataca 546  Q
    |||||||||||||    
T  10277404 acttcaatataca 10277416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 333 - 486
Target Start/End: Original strand, 30695292 - 30695446
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||||| || ||    
T  30695292 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 30695391  T
Q  433 tagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||  |||||||||||    
T  30695392 tagaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaac 30695446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 333 - 486
Target Start/End: Complemental strand, 7104101 - 7103943
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaatta 430  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| ||     
T  7104101 ttgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7104002  T
Q  431 gttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    ||||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  7104001 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 333 - 437
Target Start/End: Complemental strand, 40371893 - 40371789
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| | || |||||||||||||  ||||||||| || ||    
T  40371893 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgt 40371794  T
Q  433 tagag 437  Q
    |||||    
T  40371793 tagag 40371789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 7099531 - 7099374
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  7099531 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7099432  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  7099431 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 12023289 - 12023446
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  12023289 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12023388  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  12023389 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 16794108 - 16794265
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 16798669 - 16798826
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  16798669 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16798768  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  16798769 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 32486143 - 32486033
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| | || ||||||||||||| |||||||||| || ||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 32486044  T
Q  433 tagagattagc 443  Q
    ||||| |||||    
T  32486043 tagaggttagc 32486033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 19502307 - 19502417
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaa-tcacatttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||| |||||||| | || ||||||||||||| |||||||||| || |    
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttg 19502406  T
Q  432 ttagagattag 442  Q
    |||||| ||||    
T  19502407 ttagaggttag 19502417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 411
Target Start/End: Complemental strand, 40367757 - 40367680
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| | || |||||||||    
T  40367757 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta 40367680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 423
Target Start/End: Original strand, 37682036 - 37682127
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgtta 423  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||    
T  37682036 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtta 37682127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 333 - 411
Target Start/End: Original strand, 36632313 - 36632391
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| || | || |||||||||    
T  36632313 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtttgtta 36632391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 43384972 - 43385054
Alignment:
Q  354 agtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagttaga 436  Q
    ||||||||||||||||||||| |||||||||||||||||||||   || ||||||||||||| |||||||||| || ||||||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttaga 43385054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 382 - 491
Target Start/End: Complemental strand, 20830437 - 20830327
Alignment:
Q  382 tggttaatcacatttagattcagtttgttatgaattttgttacaaattagttagagattagctcataaggt-tagggtttgttacttagcttgcacttca 480  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| || |||||||||||||  ||||| |  || ||||||||| | |||||  |||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  481 agcaacctaac 491  Q
    |||||| ||||    
T  20830337 agcaacttaac 20830327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 334 - 491
Target Start/End: Complemental strand, 26336964 - 26336804
Alignment:
Q  334 tgttagtttgttttaattcaagttt-agtttagtgataatcacaattagtggttaatcacatttag-attcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||  ||| |||||||||||| |  || ||||||||||||  |||||||||  || |    
T  26336964 tgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttg 26336865  T
Q  432 ttagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaacctaac 491  Q
    |||||| |||||  ||||| | ||| ||||||||| | | |||  ||||||||||| ||||    
T  26336864 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaac 26336804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 37658732 - 37658792
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcaca 393  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||    
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcaca 37658792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 20808749 - 20808694
Alignment:
Q  382 tggttaatcacatttagattcagtttgttatgaattttgttacaaattagttagag 437  Q
    ||||||||||||||||| |||||||||||||||| || ||||||| || |||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagag 20808694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 2e-97; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 334 - 585
Target Start/End: Original strand, 31359151 - 31359400
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  31359151 tgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagtt 31359250  T
Q  434 agagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttact 533  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||     
T  31359251 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatattttaca 31359350  T
Q  534 acttcaatatacattcattttttcatcaatcacataacctttctcttctctc 585  Q
    | |||||| || |||||   |||||||||||| ||||| | |||||||||||    
T  31359351 atttcaatttatattca--atttcatcaatcatataacttctctcttctctc 31359400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 334 - 608
Target Start/End: Original strand, 31354678 - 31354949
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||    
T  31354678 tgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcagtt-gttatgaattttgttacaagttactt 31354776  T
Q  434 agagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttact 533  Q
    || ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||  |||||||||||||||| |||||||||||||||||||     
T  31354777 agggattagctcataaggttagggtttgttacttagcttgtacgtcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatattttaca 31354876  T
Q  534 acttcaatatacattcattttttcatcaatcacataacctttctcttctctcaatttctctcta-aattcacaaat 608  Q
    |||| ||||||||||||   |||||||||||  ||||| | | ||||||||||| ||||||||| |||||||||||    
T  31354877 acttaaatatacattca--atttcatcaatcgtataacttctatcttctctcaa-ttctctctataattcacaaat 31354949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 334 - 542
Target Start/End: Complemental strand, 49274668 - 49274461
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  49274668 tgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaattt-gttacaagttagtt 49274570  T
Q  434 agagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttact 533  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||    
T  49274569 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatatgttact 49274470  T
Q  534 acttcaata 542  Q
    |||||||||    
T  49274469 acttcaata 49274461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 333 - 542
Target Start/End: Original strand, 41884924 - 41885132
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  41884924 ttgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattt-gttacaagttagt 41885022  T
Q  433 tagagattagctcataaggttagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttac 532  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||| |||||||||||||| ||||    
T  41885023 tagagattagctcataagattagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataaactaaactcttgtacatatgttac 41885122  T
Q  533 tacttcaata 542  Q
     | |||||||    
T  41885123 aatttcaata 41885132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 334 - 491
Target Start/End: Complemental strand, 8892778 - 8892619
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| | || ||||||||||||| ||||||||||||| ||    
T  8892778 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttgt 8892679  T
Q  433 tagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaacctaac 491  Q
    |||||||||||  ||||| | ||| ||||||||| | |||||  ||||||||||| ||||    
T  8892678 tagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaac 8892619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 53722007 - 53722160
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||||| || |||    
T  53722007 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 53722106  T
Q  434 agagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    ||||  ||||  ||||| | ||| ||||||||| | |||||  |||||||||||    
T  53722107 agaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 53722160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 334 - 491
Target Start/End: Complemental strand, 10317220 - 10317062
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| || | |  ||||||||||||| |||||||||| || |||    
T  10317220 tgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgtt 10317121  T
Q  434 agagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaacctaac 491  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||  ||||||||||| ||||    
T  10317120 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaac 10317062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 334 - 443
Target Start/End: Original strand, 31670090 - 31670200
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || | || ||||||||||||| |||||||||| || ||    
T  31670090 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgt 31670189  T
Q  433 tagagattagc 443  Q
    ||||| |||||    
T  31670190 tagaggttagc 31670200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 3770842 - 3770999
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 44147023 - 44147180
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 44151558 - 44151715
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  44151558 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44151657  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  44151658 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 334 - 443
Target Start/End: Original strand, 27186142 - 27186255
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttag--attcag-tttgttatgaattttgttacaaatt 429  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |   || || ||||||||||| |||||||||| ||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  430 agttagagattagc 443  Q
     ||||||| |||||    
T  27186242 tgttagaggttagc 27186255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 341 - 423
Target Start/End: Complemental strand, 43683813 - 43683731
Alignment:
Q  341 ttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgtta 423  Q
    ||||||||||||||||||| |||||||||||||||||| |||| ||||||||| || | || ||||||||||||| |||||||    
T  43683813 ttgttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta 43683731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 491
Target Start/End: Original strand, 53785880 - 53786004
Alignment:
Q  368 ataatcacaattagtggttaatcacatttaga--ttcagtttgttatgaattttgttacaaattagttagagattagctcataaggttagggtttgttac 465  Q
    ||||||||| | |||||||||||||||||||   ||  |||||||| |||||| ||||||| || |||||| | ||||| |||  |||||||||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaattt-gttacaagtttgttagaaactagcttatatagttagggtttgttac 53785978  T
Q  466 ttagcttgcacttcaagcaacctaac 491  Q
     |||||||  ||||||||||||||||    
T  53785979 atagcttgtgcttcaagcaacctaac 53786004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 392
Target Start/End: Complemental strand, 50628087 - 50628029
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac 392  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||| |||| ||||||||    
T  50628087 tgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcac 50628029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 1e-80; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 453 - 672
Target Start/End: Original strand, 11032659 - 11032876
Alignment:
Q  453 tagggtttgttacttagcttgcacttcaagcaacctaaccaagtttgtgtatataagctagactcttgtacatattttactacttcaatatacattcatt 552  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |    
T  11032659 tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacatatgttactacttcaatatacattcaat 11032758  T
Q  553 ttttcatcaatcacataacctttctcttctctcaatttctctctaaattcacaaatacactaaaccagaaaaaccttataattatttcttgttgtttaag 652  Q
    ||  ||||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  11032759 tt--catcaatcatataacttttctcctctctcaatttctctctatattcacaaatacactaaaccagaaaaacctaagaattgtttcttgttgtttaag 11032856  T
Q  653 cttcatagttgcgctatcaa 672  Q
    |||||||| |||||||||||    
T  11032857 cttcatagatgcgctatcaa 11032876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 28644562 - 28644715
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||||| || |||    
T  28644562 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 28644661  T
Q  434 agagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||  |||||||||||    
T  28644662 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 28644715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 330 - 486
Target Start/End: Complemental strand, 43812203 - 43812044
Alignment:
Q  330 cagttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaatt 429  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||| |||||||||| ||    
T  43812203 cagttgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtt 43812104  T
Q  430 agttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
     ||||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  43812103 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 331 - 489
Target Start/End: Complemental strand, 30410489 - 30410330
Alignment:
Q  331 agttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaatta 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | || | ||||||||||| |||||||||| ||     
T  30410489 agttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagttt 30410390  T
Q  431 gttagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaaccta 489  Q
    ||||||| ||||   ||||| | |||  |||||||| | ||||| |||||||||||||||    
T  30410389 gttagaggttagtagataagatctagattttgttacattgcttgtacttcaagcaaccta 30410330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 333 - 486
Target Start/End: Complemental strand, 42234852 - 42234698
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | || ||||||||||||| |||||||||| || ||    
T  42234852 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgt 42234753  T
Q  433 tagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    ||||| |||||  ||||| | ||| ||||||||| | |||||  |||||||||||    
T  42234752 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac 42234698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 43807640 - 43807485
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||| |||||||||| || |||    
T  43807640 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43807541  T
Q  434 agagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  43807540 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 33071918 - 33072071
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||   || ||||||||||||| |||||||||| || |||    
T  33071918 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgtt 33072017  T
Q  434 agagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
     ||| |||||  ||||| | ||| ||||||||| | |||||  |||||||||||    
T  33072018 ggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac 33072071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 197841 - 197684
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  197841 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 197742  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  197741 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 202359 - 202202
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  202359 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 202260  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  202259 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 312678 - 312521
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  312678 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 312579  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  312578 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 317196 - 317039
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  317196 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 317097  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  317096 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 38757002 - 38757064
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38757002 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacatt 38757064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 333 - 411
Target Start/End: Original strand, 41945338 - 41945416
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| || | || |||||||||    
T  41945338 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta 41945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 41949802 - 41949894
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaa 426  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||||||| |  | || |||||||| |||| ||||||||||    
T  41949802 tgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaa 41949894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 627
Target Start/End: Original strand, 1291562 - 1291617
Alignment:
Q  572 ctttctcttctctcaatttctctctaaattcacaaatacactaaaccagaaaaacc 627  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||    
T  1291562 ctttctcttctctcaatttctctctaaattcactaatacactaaacctgcaaaacc 1291617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 30405960 - 30405918
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcaca 376  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30405960 tgttagtttgttttaattcaagtttagtttagtgataatcaca 30405918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 362 - 490
Target Start/End: Complemental strand, 27435314 - 27435190
Alignment:
Q  362 ttagtgataatcacaattagtggttaatcacatt-tagattcagtttgttatgaatt-ttgttacaaattagttagagattagctcataaggttagggtt 459  Q
    |||||||||||| || |||||||||||||||||| | | || |||||||||||| || ||||||||| || |      |||||| ||||  |||||||||    
T  27435314 ttagtgataatctcacttagtggttaatcacattattgttttagtttgttatgagttattgttacaagtttg------attagcacatagagttagggtt 27435221  T
Q  460 tgttacttagcttgcacttcaagcaacctaa 490  Q
    |||||| |||||||  |||||||||||||||    
T  27435220 tgttacatagcttgtgcttcaagcaacctaa 27435190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 618
Target Start/End: Original strand, 1286856 - 1286900
Alignment:
Q  572 ctttctcttctctcaatttctctctaaattcacaaatacactaaacc 618  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||    
T  1286856 ctttctcttctctcaatt--tctctaaattcactaatacactaaacc 1286900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 6e-64; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 372 - 512
Target Start/End: Complemental strand, 6440979 - 6440839
Alignment:
Q  372 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagttagagattagctcataaggttagggtttgttacttagct 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggttagggtttgttacttagct 6440880  T
Q  472 tgcacttcaagcaacctaaccaagtttgtgtatataagcta 512  Q
    || ||||||||||||||||||||  ||||||||||||||||    
T  6440879 tgtacttcaagcaacctaaccaaacttgtgtatataagcta 6440839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 333 - 443
Target Start/End: Complemental strand, 17096432 - 17096322
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | || ||||||||||||| |||||||||| || ||    
T  17096432 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 17096333  T
Q  433 tagagattagc 443  Q
    ||||| |||||    
T  17096332 tagaggttagc 17096322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 334 - 425
Target Start/End: Complemental strand, 27552267 - 27552176
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttaca 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||||    
T  27552267 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttaca 27552176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 333 - 442
Target Start/End: Complemental strand, 8320200 - 8320091
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  | || ||||||||||||| |||||||||| || ||    
T  8320200 ttgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgt 8320101  T
Q  433 tagagattag 442  Q
    ||||| ||||    
T  8320100 tagaggttag 8320091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 27574884 - 27574795
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgtta 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||    
T  27574884 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta 27574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 8315661 - 8315507
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattagt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || ||    
T  8315661 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgt 8315562  T
Q  433 tagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||  |||||||||||    
T  8315561 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 8315507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 17895881 - 17895771
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||   || |||||||| |||| |||||||||| || ||    
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgt 17895782  T
Q  433 tagagattagc 443  Q
    ||||| |||||    
T  17895781 tagaggttagc 17895771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 334 - 437
Target Start/End: Original strand, 17779914 - 17780018
Alignment:
Q  334 tgttagtttgtttt-aattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||| | || ||||||||||||| ||||||| || || ||    
T  17779914 tgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgt 17780013  T
Q  433 tagag 437  Q
    |||||    
T  17780014 tagag 17780018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 412
Target Start/End: Complemental strand, 17887000 - 17886921
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttat 412  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| | || ||||||||||    
T  17887000 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttat 17886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 334 - 443
Target Start/End: Complemental strand, 14531945 - 14531835
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| | || |||||||||||| | || |||| |||||||| |||||||||  || ||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgt 14531846  T
Q  433 tagagattagc 443  Q
    ||||| |||||    
T  14531845 tagaggttagc 14531835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 334 - 437
Target Start/End: Original strand, 27761397 - 27761500
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||| |||||||||| || |||    
T  27761397 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 27761496  T
Q  434 agag 437  Q
    ||||    
T  27761497 agag 27761500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 334 - 437
Target Start/End: Original strand, 27756846 - 27756949
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagtt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  | || ||||||||||||| |||||||||| || |||    
T  27756846 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgtt 27756945  T
Q  434 agag 437  Q
    ||||    
T  27756946 agag 27756949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 334 - 487
Target Start/End: Original strand, 35705634 - 35705789
Alignment:
Q  334 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttg-ttatgaattttgttacaaattagt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||| ||||| | |||||||||| || ||    
T  35705634 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttgt 35705733  T
Q  433 tagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaacc 487  Q
    ||||| |||||  ||||| | ||| ||||||||| | |||||  ||||||||||||    
T  35705734 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacc 35705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 340 - 443
Target Start/End: Complemental strand, 47419729 - 47419626
Alignment:
Q  340 tttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagttagagat 439  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||||| ||  |||||| |    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  440 tagc 443  Q
    ||||    
T  47419629 tagc 47419626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 7940240 - 7940083
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  7940240 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7940141  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  7940140 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 7944793 - 7944636
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 333 - 486
Target Start/End: Original strand, 22901153 - 22901309
Alignment:
Q  333 ttgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaatta 430  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| ||     
T  22901153 ttgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 22901252  T
Q  431 gttagagattagctcataaggt-tagggtttgttacttagcttgcacttcaagcaac 486  Q
    ||||||| |||||  ||||| | ||| ||||||||| | |||||  |||||||||||    
T  22901253 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 22901309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 559 - 668
Target Start/End: Original strand, 8675192 - 8675299
Alignment:
Q  559 tcaatcacataacctttctcttctctcaatttctctctaaattcacaaatacac-taaaccagaaaaaccttataattatttcttgttgtttaagcttca 657  Q
    |||||||||||| |||||||||||||||||  |||||||||| |||||||||||  ||||||| |||||| || |||| ||||||||||||||||||||     
T  8675192 tcaatcacataatctttctcttctctcaat--ctctctaaatacacaaatacacaaaaaccag-aaaaccctagaattgtttcttgttgtttaagcttcc 8675288  T
Q  658 tagttgcgcta 668  Q
    || ||||||||    
T  8675289 tacttgcgcta 8675299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 7466670 - 7466591
Alignment:
Q  333 ttgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 411  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||| | || |||||||||    
T  7466670 ttgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta 7466591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 482
Target Start/End: Original strand, 37355573 - 37355710
Alignment:
Q  346 ttaattcaagtttagtttagtgataatcacaattagtggttaatcacatt-tagattcagtttgttatgaattttgttacaaattagttagagattagct 444  Q
    ||||||||||||||  | ||||||||||||| |||||||||||||| ||| | | || |||||||||||||  ||||||||| ||  |||||||||||||    
T  37355573 ttaattcaagtttacct-agtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattagct 37355671  T
Q  445 cata-aggttagggtttgttacttagcttgcacttcaag 482  Q
      ||   |||||||||||||||||  |||| ||||||||    
T  37355672 tgtatttgttagggtttgttactttacttgtacttcaag 37355710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 346 - 491
Target Start/End: Complemental strand, 13828248 - 13828101
Alignment:
Q  346 ttaattcaagtttagtttagtgataatcacaattagt-ggttaatcacatttagattcagtttgttatgaattttgttacaaattagttagagattagct 444  Q
    ||||||||||||||  |||||||||||||   ||||| ||||||||||||||  |||  ||||||| |||| |||||||||| || |||||||  || ||    
T  13828248 ttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatct 13828149  T
Q  445 cataa-ggttagggtttgttacttagcttgcacttcaagcaacctaac 491  Q
     ||||  |||||||| |||||| | |||||  |||||||| |||||||    
T  13828148 aataatagttagggtctgttacattgcttgtgcttcaagctacctaac 13828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 7506 - 7626
Alignment:
Q  334 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaaattagt 432  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| || | || ||||||||||||| |||||||||| || ||    
T  7506 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgt 7605  T
Q  433 tagagattagctcataaggtt 453  Q
    ||||| |||||  ||||||||    
T  7606 tagaggttagcaaataaggtt 7626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Original strand, 2980 - 3137
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  2980 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3079  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  3080 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 45022 - 44865
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  45022 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44923  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  44922 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 334 - 486
Target Start/End: Complemental strand, 49602 - 49445
Alignment:
Q  334 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaaattag 431  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||| || |    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  432 ttagagattagctcataag---gttagggtttgttacttagcttgcacttcaagcaac 486  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||  |||||||||||    
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 336 - 465
Target Start/End: Complemental strand, 60302 - 60171
Alignment:
Q  336 ttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattc-agtttgttatgaattttgttacaaattagtta 434  Q
    ||||||||||||||||||||||   ||  |  |||||||||||||||| |||||||||||||  ||  |||||||||| ||||||||||| | || ||||    
T  60302 ttagtttgttttaattcaagttactttgtgatataatcacaattagtgattaatcacatttaatttttagtttgttataaattttgttaccagtttgtta 60203  T
Q  435 gagattagctcataag-gttagggtttgttac 465  Q
    || ||||||||||||| || ||||||||||||    
T  60202 gaaattagctcataagagtcagggtttgttac 60171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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