View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_12 (Length: 504)
Name: NF1245_low_12
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 30 - 496
Target Start/End: Original strand, 43522664 - 43523133
Alignment:
| Q |
30 |
cttaaacactaccatgtttcatgtctcttacgtccttttccccctaattgctaaccacacaaaaaatataacttgaagttgaagacataagggtgtcatt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43522664 |
cttaaacactaccatgtttcatgtctcttacgtcctttttcccctaattgctaaccacacaaaaaatataacttgaagttgaagacataagggtgtcatt |
43522763 |
T |
|
| Q |
130 |
gcgaatctatgttgggtacaacaactgatagttaactaactcaaaacagtgttactaactaagacattacatgcattaccactcat---ttcagcaccct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43522764 |
gcgaatctatgttgggtacaacaactgatagttaactaactcaaaacagtgttactaactaagacattacatgcattaccactcataatttcagcaccct |
43522863 |
T |
|
| Q |
227 |
tggcccaatggaccagacatcctgaatcctgatccttcttagaccatgttctaagtctctgtcatcatctcatgcatggtggtgcattaccggtcattac |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43522864 |
tggcccaatggaccagacatcctgaatcctgatccttcttagaccatcttctaagtctctgtcatcatctcatgcatggtggtgcattaccggtcattac |
43522963 |
T |
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| Q |
327 |
catagacataactccacgcatgtatgagtgtgggttttcttttgttttagtctcatctactcatgacacgtgttgtttgatgatttagtacatgctgact |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43522964 |
catagacataactccacgcatgtatgagtgtgggttttcttttgttttagtctcatctactcatgacacgtgttgtttgatgatttagtacatgctgact |
43523063 |
T |
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| Q |
427 |
cgatcggtttcatatgcttatgtctcagaacacacctcacattgtcacatgcttgcttcctatattattc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43523064 |
cgatcggtttcatatgcttatgtctcagaacacacctcacattgtcacatgcttgcttcctatattattc |
43523133 |
T |
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