View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_13 (Length: 503)
Name: NF1245_low_13
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 189 - 473
Target Start/End: Original strand, 19504447 - 19504737
Alignment:
| Q |
189 |
gggttgtgaacaaacgaatgtttactttaaagaagaagctcaatggacggt--taagaaccaatatcatta----atttcaactctcgatgtgatccgat |
282 |
Q |
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| T |
19504447 |
gggttgtgaacaaacgaatgtttactttaaagaagaagatcaatgaacggtgttaagaaccaatattattaattaatttcaactctggacgtgatccgat |
19504546 |
T |
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| Q |
283 |
cacaacgtccttggtgtgtaatgccactagagatcatgtatttttcctcgttcctcaaaagaggttagtgttgttgagagtagagatcgtggatttgtcg |
382 |
Q |
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| T |
19504547 |
cacaacgtccttggtgtgtaatgccactagagatcatgtatttttcctcattcctcaaaagtggttagagttgttgagagtagagatcgtggatttgccg |
19504646 |
T |
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| Q |
383 |
catcatcatgtagtctcactatgctttgactcagctctgagccttttatgacccacattcttagttagtttccttgagaaaaaatcggttc |
473 |
Q |
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| T |
19504647 |
cgtaatcgtgtagtcccactatgctttgactcacctctgagccttttatgacccacattcttagttagttttcttgagaaaaaatccgttc |
19504737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 19504313 - 19504413
Alignment:
| Q |
14 |
gaacataagacatgtcaatgaaattactaatgtttggtaagaaactaggaacctccatgaacatacaatttaagatgatgatcgtttagaaagatgaagg |
113 |
Q |
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| T |
19504313 |
gaacataagacatgtcaatgaaattactaatgtttggttagaaactaggaacctccatgaacatacaatttaagatgatgatcgtttagaaagatgaagg |
19504412 |
T |
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| Q |
114 |
t |
114 |
Q |
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| T |
19504413 |
t |
19504413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 18390958 - 18390875
Alignment:
| Q |
328 |
cctcgttcctcaaaagaggttagtgttgttgagagtagagatcgtggatttgtcgcatcatcatgtagtctcactatgctttga |
411 |
Q |
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|||| ||||| |||| |||||||| |||||| ||||||||| |||| ||||||||||||| || |||||| |||||||||||| |
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| T |
18390958 |
cctcattcctaaaaaacggttagtggtgttgaaagtagagattgtgggtttgtcgcatcattatctagtcttactatgctttga |
18390875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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