View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_15 (Length: 473)
Name: NF1245_low_15
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Original strand, 35020136 - 35020569
Alignment:
| Q |
5 |
gagaagcaaaggataagaaaaatgattagagannnnnnngatcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttgg |
104 |
Q |
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| T |
35020136 |
gagaatcaaaggataagaaaaatgattagagatttttttaatcttagtggttcatttgttgtttctgacatgttaccgtatttgagatggttggatttgg |
35020235 |
T |
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| Q |
105 |
atggaaaacagaagcaaatgaagaaaacagcaaaagaaatggatgagtttgtttgtgtttggcttgatcaacacaaacgtaacaagaattctggtcgtga |
204 |
Q |
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| T |
35020236 |
atggaaaacagaagcaaatgaagaaaacagcaaaagagttagatgactttgtttgtgtttggcttgatcagcacaaacataagaagaattctggtcgtga |
35020335 |
T |
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| Q |
205 |
acaagatttcatggatgtgctgctttcaaccgttgatgaagatttagatggtcgtgatgctgatactacaatcaaagccacttgtatggtatgtcacttg |
304 |
Q |
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| T |
35020336 |
acaagatttcatggatgtgctgctttcaaccgttgatgaagatttagatggccgtgatgctgatactacaatcaaagccacttgtatggtatgtcacttg |
35020435 |
T |
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| Q |
305 |
cttccattgtctgctctttcaaatatctaaagtatttcatgtttttaattcaaggcactcgttagttagacttgaagcaaagaaattaaacttgagaaaa |
404 |
Q |
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| T |
35020436 |
cttccattgtctgctctttcaaatat------tatttcatgtttttaattcaaggcactcgttaattagacttgaagcaaagaaattaaacttgagaaaa |
35020529 |
T |
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| Q |
405 |
caaaccaaaactatacctaagaagcaaagacacttgaaac |
444 |
Q |
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| T |
35020530 |
caaaccaaaactatccataagaagcaaagacacttgaaac |
35020569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 44 - 298
Target Start/End: Original strand, 35036374 - 35036634
Alignment:
| Q |
44 |
gatcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagaaa |
143 |
Q |
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| T |
35036374 |
gatctcagcggttcatttgttatatctgacatgttgcggttttttagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagt |
35036473 |
T |
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| Q |
144 |
tggatgagtttgtttgtgtttggcttgatcaacacaaacgtaacaagaattctggtcgtgaacaa----gatttcatggatgtgctgctttcaaccgttg |
239 |
Q |
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| T |
35036474 |
tagatgattttgttcaagtttggctcgatcaacacaaacgcaacaagaaacct-gccggcaccaaacttgacttcatggatgtgctcctttcaaccgttg |
35036572 |
T |
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| Q |
240 |
atg---aagatttagatggtcgtgatgctgatactacaatcaaagccacttgtatggtatgt |
298 |
Q |
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| T |
35036573 |
atgatcaagatatagatggtcgtgatgctgacaccacaatcaaagcaacttgtctggtatgt |
35036634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 35044506 - 35044646
Alignment:
| Q |
45 |
atcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagaaat |
144 |
Q |
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| T |
35044506 |
atctttgtggttcctttgttatatctgattcgttgccgtttttaagatggttggatttggatggaaaagagaaggaaatgaagaaaactgctaaagagtt |
35044605 |
T |
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| Q |
145 |
ggatgagtttgtttgtgtttggcttgatcaacacaaacgta |
185 |
Q |
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| T |
35044606 |
ggatgagtttgttcaaggttggattgatcaacacaaacgta |
35044646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 35030437 - 35030510
Alignment:
| Q |
252 |
atggtcgtgatgctgatactacaatcaaagccacttgtatggtatgtcacttgcttccattgtctgctctttca |
325 |
Q |
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| T |
35030437 |
atggtcgtgatgctgatactataatcaaagttacttgtatggtacgtcacttgccacctttgtcggctctttca |
35030510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 35030251 - 35030299
Alignment:
| Q |
214 |
catggatgtgctgctttcaaccgttgatgaagatttagatggtcgtgat |
262 |
Q |
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| T |
35030251 |
catggatgtgctgctttccaccattgatgaagatttagatgttcgtgat |
35030299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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