View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1245_low_16 (Length: 467)
Name: NF1245_low_16
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Original strand, 25431226 - 25431654
Alignment:
| Q |
11 |
cacagataaggagctcacaatcactaaaagtagtgaatgaagaagtgaactcagatgaaggtcaaaacaataatgtaaggtcacacagaaacaaactgat |
110 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25431226 |
cacaaataaggagctcactatcactaaaagtagtgaatgaagaagtgaactcagatgaaggtcaaaacatcaatgtaaggtcacacagaaacaaactgat |
25431325 |
T |
|
| Q |
111 |
tccta--agactagtagattgacaacttacttctgatgatgagataggtagtgctggtgaactaatgaattttgcaatgctagtagatgtagaaccaatt |
208 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25431326 |
tcctataagactagtagattgacaacttatttctgatgatgagataggtagtgatggtgaactaatgaattttgcaatgctagcagatgtagaaccaatt |
25431425 |
T |
|
| Q |
209 |
tattacataatagcaatgcaagacaaaacctagaaggaagccatgataaaataaccaaagtcaattgagaataatcaaacatgtgaactaatcaagttac |
308 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25431426 |
tattacataatagcaatgcaagacaaagcccagaaggaagccatgataaaataaccaaagtcaattgagaataatcaaacatgtgaactaatcaagttac |
25431525 |
T |
|
| Q |
309 |
caagcggtaataaatctattgatgttaaatggattttcaagctaaaactaaacctttatgagaagattgagaagcatgaacctatactcgtggccaaagg |
408 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
25431526 |
cgagcggtaataaatctattgatgttaaatggattttcaagctaaaactgaacctttatgagaagattgagaagcacgaacctagactcgtgaccaaagg |
25431625 |
T |
|
| Q |
409 |
attcttacaaagtgaaggctatgaataat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25431626 |
attcttacaaagtgaaggctatgaataat |
25431654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University