View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_2 (Length: 761)
Name: NF1245_low_2
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 682; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 10 - 732
Target Start/End: Original strand, 46632116 - 46632838
Alignment:
| Q |
10 |
tcataggtcacgggaattaacaaacttattcttaaaactcaaannnnnnngtttaagtaaacttaaaactcaattagtgcctagaaaattgcttcttttg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632116 |
tcataggtcacgggaattaacaaacttattcttaaaactcaattttttttgcttgagtaaacttaaaactcaattagtgcctagaaaattgcttcttttg |
46632215 |
T |
|
| Q |
110 |
tgtgttgtaaaatccaaagtaaaacatgttacattataaaattgtttagtctatccaaatgaggaacaatatgaagtagttatagtcatgaaattcggtt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46632216 |
tgtgttgtaaaatccaaagtaaaacatgttacattataaaattgtttagtctatccaaatgaggaacaatatgaagtagttctagtcatgaaattcggtt |
46632315 |
T |
|
| Q |
210 |
ttgtgcatgtaggaaatggacagaggcttggaagacaacatcaaaattgtggagatggatttttgtgaatcaaaaggcaactctacaagcagaagcagca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632316 |
ttgtgcatgtaggaaatggacagaggcttggaagacaacatcaaaattgtggagatggatttttgtgaatcaaaaggcaactctacaagcagaagcagca |
46632415 |
T |
|
| Q |
310 |
gtgtaaatagacaacattatgagcaatctgaaaatagatattccataaatggttcctacacgaaagaagaaaactacaaagtatcaccagctccatcagc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632416 |
gtgtaaatagacaacattatgagcaatctgaaaatagatattccataaatggttcctatacgaaagaagaaaactacaaagtatcaccagctccatcagc |
46632515 |
T |
|
| Q |
410 |
tttaacagaattgagtccaaaagcatgcagtggccattttgaggattgcttcagtacagctcaaagcagtcctcaatgctattctgctatatcaaaaaca |
509 |
Q |
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| T |
46632516 |
tttaacagaattgagtccaaaagcatgcagtggccattttgaggattgcttcagtacagctcaaagcagtcctcaatgctattctgctatatcaaaaaca |
46632615 |
T |
|
| Q |
510 |
gatgaatcaaatcacccttttgctttccctaggccatcttatgcagaacaaatgtcctatgactaccctttgtatccaagttacatggctaatacagaat |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46632616 |
gatgaatcaaatcacccttttgctttccctaggccatcttatgcagaacaaatgtcctatgactaccctttgtatccaagttacatggctaatacagaat |
46632715 |
T |
|
| Q |
610 |
catcaagagctaaagttagatcacaaagtgcaccaaaacaaaggcctgattcatttgagaggcaactgagtcggcggagaatttcggttgaaggaagaaa |
709 |
Q |
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| T |
46632716 |
catcaagagctaaagttagatcacaaagtgcaccaaaacaaaggcctgattcatttgagaggcaactgagtcggcggagaatttcggttgaaggaagaaa |
46632815 |
T |
|
| Q |
710 |
tgttcctaggccagtgaggatgc |
732 |
Q |
| |
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| T |
46632816 |
tgttcctaggccagtgaggatgc |
46632838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 387 - 731
Target Start/End: Original strand, 15506783 - 15507130
Alignment:
| Q |
387 |
aaagtatcaccagctccatcagctttaacagaattgagtccaaaagcatgcagtggccattttgaggattgct---tcagtacagctcaaagcagtcctc |
483 |
Q |
| |
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|||| ||||||| | |||||||| ||||||| | || |||| |||||||||||| |||||||||||||| | |||||||||| || | |||||| |
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| T |
15506783 |
aaagaatcaccaacaccatcagcactaacagattcaagcccaagagcatgcagtggacattttgaggattgttccctcagtacagcacagaacagtccct |
15506882 |
T |
|
| Q |
484 |
aatgctattctgctatatcaaaaacagatgaatcaaatcacccttttgctttccctaggccatcttatgcagaacaaatgtcctatgactaccctttgta |
583 |
Q |
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| | ||| || ||| | |||| | |||| | ||||| | |||||||||||| |||| | ||| |||| |||| || || ||||||| || || | |
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| T |
15506883 |
attactactcagctgtttcaagagtagataattcaaagcttccttttgctttcactagacaatcctatgaagaatccattcccaatgactatccattatt |
15506982 |
T |
|
| Q |
584 |
tccaagttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggcctgattcatttgagaggcaactgagtcgg |
683 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| || | ||||| |||| ||||||| |
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| T |
15506983 |
tccaaattacatggctaacacagaatcatcaagagctaaagtcagatcacaaagtgcaccgaagcaaaggccggacatgtacgagagacaaccgagtcgg |
15507082 |
T |
|
| Q |
684 |
cggagaatttcggttgaaggaagaaatgttcctaggccagtgaggatg |
731 |
Q |
| |
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|| ||| ||| || ||||||||||||||||| ||||||||||||||| |
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| T |
15507083 |
cgaagagcttctgtggaaggaagaaatgttccaaggccagtgaggatg |
15507130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 654
Target Start/End: Complemental strand, 45768377 - 45768313
Alignment:
| Q |
590 |
ttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggc |
654 |
Q |
| |
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||||||||| || || ||||| || |||||||| |||||||||||||||||||||| |||||||| |
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| T |
45768377 |
ttacatggcaaacactgaatcttctagagctaaggttagatcacaaagtgcaccaagacaaaggc |
45768313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 256 - 389
Target Start/End: Original strand, 11979706 - 11979843
Alignment:
| Q |
256 |
ttgtggagatggatttttgtgaatcaaaaggcaactctacaagcagaagcagcagtgta-aatagaca---acattatgagcaatctgaaaatagatatt |
351 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||| |||||||||||| ||||||| | || | | ||||||||| |||| |||| ||||||||| |
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| T |
11979706 |
ttgtggagatggatttttgtgaatcaaatggtaattctgcaagcagaagcaacagtgtatattacaaatggacattatgaacaatttgaacatagatatt |
11979805 |
T |
|
| Q |
352 |
ccataaatggttcctacacgaaagaagaaaactacaaa |
389 |
Q |
| |
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||| ||||||||||||| | ||||||||||| |||||| |
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| T |
11979806 |
ccacaaatggttcctactcaaaagaagaaaaatacaaa |
11979843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 656
Target Start/End: Original strand, 42635284 - 42635355
Alignment:
| Q |
585 |
ccaagttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaaggcct |
656 |
Q |
| |
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||||||||||||||| ||||||| || ||| || ||||||||||| | ||||||||||||||||||||| |
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| T |
42635284 |
ccaagttacatggcttatacagagtcggcaaaggccaaagttagatctctgagtgcaccaaaacaaaggcct |
42635355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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