View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_20 (Length: 437)
Name: NF1245_low_20
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 28936634 - 28936960
Alignment:
| Q |
17 |
gaatatcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttcgtttgacattag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28936634 |
gaatatcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttcgtttgacattag |
28936733 |
T |
|
| Q |
117 |
caaatacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaacttcggttttctacggcatatctagcaatagtgggaacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28936734 |
caaatacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaacttcggttttctacggcatatgtagcaatagtgggaacc |
28936833 |
T |
|
| Q |
217 |
tatataaaattattcaaaattcattcagcatcaaaagaattaaaatacattttgccattttctcttaaacatgaaaagac--agaaaacnnnnnnngaat |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
28936834 |
tatataaaattattcaaaatttattcagcatcaaaagaattaaaatacattttgccattttctcttaaacatgaaaagacaaagaaaacaaaaaaagaat |
28936933 |
T |
|
| Q |
315 |
gcatttaatcacaacagctataagaaa |
341 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
28936934 |
gcatttaatcacaacagctataagaaa |
28936960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 28926435 - 28926710
Alignment:
| Q |
21 |
atcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttcgtttgacattagcaaa |
120 |
Q |
| |
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|||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||| |
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| T |
28926435 |
atctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttgtttcttttgacagtggcaaa |
28926534 |
T |
|
| Q |
121 |
tacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaacttcggttttctacggcatatctagcaatagtgggaacctata |
220 |
Q |
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| ||||| | | | |||| |||||||||||||| ||||||| ||||||||||||||||||| | ||||| ||| | |||||||| |||||||||||| |
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| T |
28926535 |
ttcagcatcatagaagcatcttccacaaacagctattgggcaacacaagcacataaacttcgatgctctaccgcaaaggtagcaataatgggaacctata |
28926634 |
T |
|
| Q |
221 |
taaaattattcaaaattcattcagcatcaaaagaattaaaatacattttgccattttctcttaaacatgaaaagaca |
297 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||||| ||| ||||| |
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| T |
28926635 |
-aaaattattcaaaagccattcagcatcaaagtaattaaaatacatttggccatattttcttaaacaggaacagaca |
28926710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 28893395 - 28893672
Alignment:
| Q |
18 |
aatatcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttcgtttgacattagc |
117 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||| |||||||| | | ||||||||||||||||||| |||||||||| |||||| ||||||| ||| |
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| T |
28893395 |
aatatcttaccccatcagaatcgacatcaacatttttctcaattaaataggcaagttttgagcagtgcctacaaaatcctctgtttcttttgacaagagc |
28893494 |
T |
|
| Q |
118 |
aaatacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaacttcggttttctacggcatatctagcaatagtgggaacct |
217 |
Q |
| |
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|||| ||||||| ||| |||| |||| ||||| |||| ||||||||||||||||||||||||||| | || | ||||| | ||||| |||||||| |
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| T |
28893495 |
aaattcagcaccatggaagcattttctacaaaaagctattgggcagcacaagcacataaacttcgatgctccatggcatccgttacaataatgggaacc- |
28893593 |
T |
|
| Q |
218 |
atataaaattattcaaaattcattcagcatcaaaagaattaaaatacattttgccattttctcttaaacatgaaaagaca |
297 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||| ||||| |
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|
| T |
28893594 |
-tataaaattattcaaaagtcattcagcatgaaaagaattaaaatgcattttgccatattctcttactcatgaacagaca |
28893672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 28917169 - 28917436
Alignment:
| Q |
18 |
aatatcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttcgtttgacattagc |
117 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| |||| |
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|
| T |
28917169 |
aatatctaaccccatcagaatcaatgtcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttggttgttttgacagtagc |
28917268 |
T |
|
| Q |
118 |
aaatacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaacttcggttttctacggcatatctagcaatagtgggaacct |
217 |
Q |
| |
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|||| ||||| | | | |||| ||||||||||||||| ||||||| || |||||| ||||||||| | ||||| ||| | |||||| | |||||||| |
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| T |
28917269 |
aaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgcaaaggtagcaaaaatgggaacc- |
28917367 |
T |
|
| Q |
218 |
atataaaattattcaaaattcattcagcatcaaaagaattaaaatacattttgccattttctcttaaaca |
287 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||| |||||||||| |||||||||| |||||||||||| |
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|
| T |
28917368 |
-tataaaattattcaaaagtcattcggcatccaaataattaaaatatattttgccatattctcttaaaca |
28917436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 28903402 - 28903649
Alignment:
| Q |
21 |
atcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttcgtttgacattagcaaa |
120 |
Q |
| |
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||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
28903402 |
atcttaccccatcagaatctacgtcagcatttttctcaattagaaaggcaagttttgagcagtgcctacaaaatcctttgtttcctttgacaagagcaaa |
28903501 |
T |
|
| Q |
121 |
tacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaacttcggttttctacggcatatctagcaatagtgggaacctata |
220 |
Q |
| |
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| ||||||| | | |||| |||||||||| |||| ||| ||| ||||||||||||||||| | | ||| || |||| |||||| | |||||| ||||| |
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| T |
28903502 |
ttcagcaccatagaagcattttccacaaaaagctattgtgcaacacaagcacataaactttgatattccaccgcattggtagcaagaatgggaagctata |
28903601 |
T |
|
| Q |
221 |
taaaattattcaaaattcattcagcatcaaaagaattaaaatacattttgc |
271 |
Q |
| |
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|||||||||||| | |||||||||||||| ||||||||||||||||| |
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|
| T |
28903602 |
-aaaattattcaaga--aattcagcatcaaaatcattaaaatacattttgc |
28903649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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