View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_22 (Length: 419)
Name: NF1245_low_22
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 45316467 - 45316842
Alignment:
| Q |
16 |
atgtaaatgaccttaaaaaatgaggctcggcaaaaaataacaccaatagtttcagtcatcaaatccctcnnnnnnnntaaaatagttacagtcatcaaag |
115 |
Q |
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| T |
45316467 |
atgtaaatgaccttaaaaaatgaggctcggcaaaaaataaaaccaatagtttcagtcatcaaatccctcaaaaaaaataaaatagttacagtcatcaaag |
45316566 |
T |
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| Q |
116 |
ttcaattttattattgaatgatgaatataagtaatctgatattggtcttcctacacctagtaacacttgaaaaagagccttttacaatggcgtggaatct |
215 |
Q |
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| T |
45316567 |
ttcaattttattattgaatgatgaatataagtaatctgatattggtcttcctacacatagtaacacttgaaaaagagccttttacaatggcgtggaatct |
45316666 |
T |
|
| Q |
216 |
ttagaaaggtaaagaattggtaatttgaaccacaaaagtcacttgcttttcttgcaaggtaaaatattgaaataaaatagacagcttgcgttcgttcatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45316667 |
ttagaaaggtaaagaattggtaatttgaaccacaaaagtcacttgcttttcttgcaaggtaaaatattgaaataaaatagacagcttgcgttcgttcatc |
45316766 |
T |
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| Q |
316 |
ttatatgttctagaaataaaatgtaatgtaaaaatataatgtatatatacttttcaacatgacgcaggttcttggt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45316767 |
ttatatgttctagaaataaaatgtaatgtaaaaatataatgtatatatacttttcaacatgacgcaggttcttggt |
45316842 |
T |
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