View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_23 (Length: 413)
Name: NF1245_low_23
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 3238990 - 3238618
Alignment:
| Q |
13 |
aatatcgaaaacatacaaaaattgagcacatgacaatgatgatatgtgtatgtagtaaattggaatttactcagagcatgaatagcctttgaggaagaaa |
112 |
Q |
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| T |
3238990 |
aatatcgaaaacatacaaaaattgagcacatgacaatgatgatatgtgtatgtagtaaattggaatttactcagagcatgaatagcctttgaggaagaaa |
3238891 |
T |
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| Q |
113 |
ctttctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctggggatttcttctcaattgctttactgt |
212 |
Q |
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| T |
3238890 |
ctttctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctggggatttcttctcaattgctttactgt |
3238791 |
T |
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| Q |
213 |
ttcagtgatgattctccatctcataaatcttacagcttcaactccaacactattgagaaagaatcatattaacttacaaagtatgaagatcattacatta |
312 |
Q |
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| T |
3238790 |
ttcagtgatgattctccatctcataaatcttacagcttcaactccaacactattgagaaagaatcatattaacttacaaagtatgaagatcattacatta |
3238691 |
T |
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| Q |
313 |
tcggttaagctttcaatttcctgatgtaacaacttgatcatgtactgatctttaagaagaaactgtgctatat |
385 |
Q |
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| T |
3238690 |
tcggttaagctttcaatttcctgatgtaacaacttgatcatgtactgatctttaagaagaaactgtgctatat |
3238618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 3243022 - 3242949
Alignment:
| Q |
116 |
tctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctgggga |
189 |
Q |
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| T |
3243022 |
tctgagtacatctgagaatcacacttagagaagttcttaatcgtccatgtgaattgctcaatcgtccatgggga |
3242949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 3242915 - 3242864
Alignment:
| Q |
244 |
acagcttcaactccaacactattgagaaagaatcatattaacttacaaagta |
295 |
Q |
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| T |
3242915 |
acagcttcaactctaacaccattgagaaagaattatattaatttataaagta |
3242864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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