View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_28 (Length: 372)
Name: NF1245_low_28
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 274
Target Start/End: Original strand, 15364603 - 15364829
Alignment:
| Q |
44 |
ctgattttcttcttgtgatatcttatttgcattttcactaatatcttctacgagattctttttatcagcttcatttatgttatcttcctctacaaaaatg |
143 |
Q |
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| T |
15364603 |
ctgattttcttcttgtgatatcttatttgcattttcactaatatcttctatgagattctttttatcagcttcacttatattatcttcctctacaaaaatg |
15364702 |
T |
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| Q |
144 |
acaaataaatgttcaatnnnnnnnnnnnnnnnnnnnntacaaatctatctacttcaacaaattttcttcagcatttcaacaaaagaacatgtacctttga |
243 |
Q |
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| T |
15364703 |
gcaaataaattttcaa----aaaaatgaagaaaaaaatacaaatctatctacttcaacaaattttcttcaacatttcaataataaaatctgtacctttga |
15364798 |
T |
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| Q |
244 |
tagcagaagtgttattatttcccatttcttt |
274 |
Q |
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| T |
15364799 |
tagcagaagtgttgttatttcccatttcttt |
15364829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 15363181 - 15363295
Alignment:
| Q |
45 |
tgattttcttcttgtgatatcttatttgcattttcactaatatcttctacgagattctttttatcagcttcatttatgttatcttcctctacaaaaatga |
144 |
Q |
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| T |
15363181 |
tgattttcttcttgtgatatctcatttgcatgttcactagtatcttctaggagattctttttatcagtttcacttatgttatcttcttctacaaaaatga |
15363280 |
T |
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| Q |
145 |
caaataaatgttcaa |
159 |
Q |
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| T |
15363281 |
cgaataaattttcaa |
15363295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 12543782 - 12543721
Alignment:
| Q |
183 |
caaatctatctacttcaacaaattttcttcagcatttcaacaaaagaacatgtacctttgat |
244 |
Q |
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| T |
12543782 |
caaatctatctactttaacaaattttcttaagcatttcaacaacagagcatgtacctttgat |
12543721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 40567595 - 40567680
Alignment:
| Q |
268 |
tttcttttaggtgccacttatctcctacttggcttgcgttatccggtgaagtgaaaatatcaactacttacaatacatacatggga |
353 |
Q |
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| T |
40567595 |
tttcttttaggtgtcacttatctcctacttggcttgcgttatccggtgaagtgaaaatatcaactacttacaatacatacatggga |
40567680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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