View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_low_30 (Length: 372)

Name: NF1245_low_30
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_low_30
NF1245_low_30
[»] chr4 (19 HSPs)
chr4 (7-224)||(12121589-12121807)
chr4 (238-358)||(12122163-12122283)
chr4 (5-234)||(1508133-1508363)
chr4 (7-234)||(1513536-1513764)
chr4 (7-234)||(1489493-1489721)
chr4 (7-230)||(1537899-1538123)
chr4 (7-189)||(1534123-1534306)
chr4 (91-231)||(1517716-1517856)
chr4 (91-231)||(1496136-1496276)
chr4 (7-137)||(1552902-1553033)
chr4 (85-229)||(558242-558386)
chr4 (238-358)||(1490244-1490362)
chr4 (238-358)||(1514287-1514405)
chr4 (7-137)||(55505237-55505368)
chr4 (74-225)||(1548624-1548775)
chr4 (19-68)||(553384-553434)
chr4 (188-234)||(1530097-1530143)
chr4 (7-67)||(546819-546880)
chr4 (19-70)||(644734-644786)
[»] chr2 (2 HSPs)
chr2 (23-231)||(44575643-44575859)
chr2 (7-137)||(45245217-45245348)
[»] chr3 (2 HSPs)
chr3 (7-134)||(51113913-51114041)
chr3 (8-137)||(514861-514991)
[»] chr6 (2 HSPs)
chr6 (19-89)||(28934933-28935004)
chr6 (7-59)||(6415880-6415933)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 12121589 - 12121807
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121589 gtcacagagatgggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 12121688  T
Q  106 cattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttatcacgtcaaggttgcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121689 cattgatattttcaaggccatcattgagaaagtttacaactccagatcgttatcgtttcaacaacaaggagatggaactcttatcacgtcaaggttgcat 12121788  T
Q  206 tgtttgctagtattctaaa 224  Q
    |||||||||||||||||||    
T  12121789 tgtttgctagtattctaaa 12121807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 12122163 - 12122283
Alignment:
Q  238 aatataatataaggattatatatttcacttaagactaagggtttattgacctgttttcgtatatgcaagataattttctggttttataagtggatgtccg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12122163 aatataatataaggattatatatttcacttaagactaagggtttattgacctgttttcgtatatgcaagataattttctggttttataagtggatgtccg 12122262  T
Q  338 ttgttaattctatcggcaaca 358  Q
    |||||||||||||||||||||    
T  12122263 ttgttaattctatcggcaaca 12122283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 1508133 - 1508363
Alignment:
Q  5 cagtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgc 103  Q
    ||||||| ||||||||||||||||||| | ||||||  ||||||||||||||||||||| ||||||||||| ||| | | || | | |||||||||||||    
T  1508133 cagtcaccgagatgggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttgaaatatggtcctaaggtacgtggtgatgttcttgc 1508232  T
Q  104 ctcattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttatcacgtcaaggttgc 203  Q
    |||||||||||||||||||||||| ||||||||  | |||| ||||  | |||||||||||| | | |  |||||||||| ||||||||||||||| |||    
T  1508233 ctcattgatattttcaaggccatcgttgagaaaaataacaattcctcttggttatcgtttcagcgatagagagatggaacacttatcacgtcaaggatgc 1508332  T
Q  204 attgtttgctagtattctaaaagtgctttct 234  Q
    |||||||||||||||||||||||||||||||    
T  1508333 attgtttgctagtattctaaaagtgctttct 1508363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 1513536 - 1513764
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    |||||||||||||||||||||| |||| ||||||  ||||||||||| ||||||||| ||||||||||||||  | ||||| || |||||||||||||||    
T  1513536 gtcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgttctaaagtgaatggtgatgttcttgcct 1513635  T
Q  106 cattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttatcacgtcaaggttgcat 205  Q
    |||||||||||||||||||||| || ||||||||   | ||||  || |||||| ||||| | |||  |||||||| |||||||||| |||||| |||||    
T  1513636 cattgatattttcaaggccatcgttaagaaagttataacctccatatggttatcatttcagcgacagagagatggagctcttatcacttcaaggatgcat 1513735  T
Q  206 tgtttgctagtattctaaaagtgctttct 234  Q
    ||||||||||||||||||||||| |||||    
T  1513736 tgtttgctagtattctaaaagtgatttct 1513764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 1489493 - 1489721
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    |||||||||| |||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||||   |||  ||||||||||  ||||||||||||||    
T  1489493 gtcacagagaagggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttgaaaatgtgtggtcaagtgcatgatgatgttcttgcct 1489592  T
Q  106 cattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttatcacgtcaaggttgcat 205  Q
    |||||||||||||||||||||| || ||||||||  |||||||  ||  |||||  |||| | |||  |||||||| |||||||||| |||||| |||||    
T  1489593 cattgatattttcaaggccatcgttaagaaagttatcaactccatatgattatcaattcagcgacagagagatggagctcttatcacttcaaggatgcat 1489692  T
Q  206 tgtttgctagtattctaaaagtgctttct 234  Q
    ||||||||||||||||||||||| |||||    
T  1489693 tgtttgctagtattctaaaagtgatttct 1489721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 1537899 - 1538123
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    |||||| ||| |||||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||   ||| |||||||| ||  |||||||||| |||    
T  1537899 gtcacacagaagggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttgaaaaggtgtgttcaagtggatgatgatgttcttacct 1537998  T
Q  106 cattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttatcacgtcaaggttgcat 205  Q
    |||||||||||||||||||||| || |||||||| ||| ||||  || |||||||||||| | |||  || ||||||||||||||||||||||| |||||    
T  1537999 cattgatattttcaaggccatcgttaagaaagttaacatctccatatggttatcgtttcagcgacagagaaatggaactcttatcacgtcaaggatgcat 1538098  T
Q  206 tgtttgctagtattctaaaagtgct 230  Q
    ||||||||||| |||||| ||||||    
T  1538099 tgtttgctagttttctaagagtgct 1538123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 1534123 - 1534306
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtaga-aagtgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    |||||||||| |||||| |||||||||||||| || ||  ||||||||  |||||||||||||| |||||||  | | ||| |  |||||||||||||||    
T  1534123 gtcacagagaagggagttaagcatgtggtagagaactgtgcacaactacaagagatcgatttgatatattgttgtaatgtgaaaagtgatgttcttgcct 1534222  T
Q  106 cattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttat 189  Q
    |||||||||| |||||||||||||||| |||  | |||||||| |||||||||||||||| | |||||||||||||||||||||    
T  1534223 cattgatattgtcaaggccatcattgaaaaatgtaacaactccagatcgttatcgtttcagcgacaaggagatggaactcttat 1534306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 1517716 - 1517856
Alignment:
Q  91 gtgatgttcttgcctcattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttatc 190  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||  | |||||||| |||| ||||||||||| | |||||||||||||||| ||||     
T  1517716 gtgatgttcttgtctcattgatattgtcaaggccatcattgaaaaatgtaacaactccagatcattatcgtttcagcgacaaggagatggaacttttatt 1517815  T
Q  191 acgtcaaggttgcattgtttgctagtattctaaaagtgctt 231  Q
     || ||||| || | ||||| |||||||||||||| |||||    
T  1517816 gcgccaaggatgtaatgtttactagtattctaaaaatgctt 1517856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 1496136 - 1496276
Alignment:
Q  91 gtgatgttcttgcctcattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttatc 190  Q
    |||||||||||| |||||||||||| ||||||||||| |||| |||  | ||||||||  |||||||||  |||||| |||||||||||||||||||||     
T  1496136 gtgatgttcttgtctcattgatattgtcaaggccatcgttgaaaaatgtaacaactccacatcgttatccattcaacgacaaggagatggaactcttatt 1496235  T
Q  191 acgtcaaggttgcattgtttgctagtattctaaaagtgctt 231  Q
     || ||||| || | ||||| |||||| ||||||| |||||    
T  1496236 gcgccaaggatgtaatgtttactagtaatctaaaaatgctt 1496276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 1552902 - 1553033
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtagaaagt-gcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    ||||| |||| ||||||||||||||| | ||||| | ||   ||||||||||||||| ||||||||  ||||||| ||||| ||  ||||||| |||| |    
T  1552902 gtcaccgagaagggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgctt 1553001  T
Q  106 cattgatattttcaaggccatcattgagaaag 137  Q
    ||||| ||||||||||||||||||||||||||    
T  1553002 cattggtattttcaaggccatcattgagaaag 1553033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 229
Target Start/End: Complemental strand, 558386 - 558242
Alignment:
Q  85 tgcattgtgatgttcttgcctcattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaact 184  Q
    ||||| || ||| ||||| |||||| ||| ||||||| ||||||||||||||||| ||||||||  ||| || |||||||| | |||  |||||||| ||    
T  558386 tgcatggtcatgatcttgtctcattaatactttcaagaccatcattgagaaagttaacaactccatatccttgtcgtttcagcgacagagagatggagct 558287  T
Q  185 cttatcacgtcaaggttgcattgtttgctagtattctaaaagtgc 229  Q
    |||||  ||| |||| |||||||  |||||||| |||||||||||    
T  558286 cttattgcgtaaaggatgcattggctgctagtaatctaaaagtgc 558242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 1490244 - 1490362
Alignment:
Q  238 aatataatataaggattatatatttcacttaagactaagggtttattgacctgttttcgtatatgcaagataattttctggttttataagtggatgtccg 337  Q
    ||||||||||  ||| |||||||| ||||||||||||| |||||||| |  ||||||||||||||||||  | ||||| | ||||| ||||||||||||     
T  1490244 aatataatatgtggagtatatattccacttaagactaatggtttatttatttgttttcgtatatgcaag--agttttccgtttttaaaagtggatgtccc 1490341  T
Q  338 ttgttaattctatcggcaaca 358  Q
    | |||| ||||||| ||||||    
T  1490342 tagttatttctatcagcaaca 1490362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 1514287 - 1514405
Alignment:
Q  238 aatataatataaggattatatatttcacttaagactaagggtttattgacctgttttcgtatatgcaagataattttctggttttataagtggatgtccg 337  Q
    ||||||||||  ||| |||||||| ||||||||||||| |||||||| |  ||||||||||||||||||  | ||||| | ||||| ||||||||||||     
T  1514287 aatataatatgtggagtatatattccacttaagactaatggtttatttatttgttttcgtatatgcaag--agttttccgtttttaaaagtggatgtccc 1514384  T
Q  338 ttgttaattctatcggcaaca 358  Q
    | |||| ||||||| ||||||    
T  1514385 tagttatttctatcagcaaca 1514405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 55505237 - 55505368
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    |||||||||| ||||||||| || ||| ||||||  ||||||||||||||||||||| | |||||   ||||  | ||||||||  |  |||| ||| ||    
T  55505237 gtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgact 55505336  T
Q  106 cattgatattttcaaggccatcattgagaaag 137  Q
    || || ||||||||||||||||||||||||||    
T  55505337 caatggtattttcaaggccatcattgagaaag 55505368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 1548624 - 1548775
Alignment:
Q  74 ttgtcttcaagtgcattgtgatgttcttgcctcattgatattttcaaggccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaag 173  Q
    |||| ||||| |||||  ||||||| | || |||||| |||||||||| ||||||||||||||| | |||||||| | || || || ||| |   |||      
T  1548624 ttgttttcaattgcatgatgatgttgtcgcttcattggtattttcaagaccatcattgagaaagataacaactccagctctttgtcattttagtgacact 1548723  T
Q  174 gagatggaactcttatcacgtcaaggttgcattgtttgctagtattctaaaa 225  Q
    |||||||||||||| || | |||||| ||  |||||||||||||||| ||||    
T  1548724 gagatggaactcttctcgcatcaaggatgtcttgtttgctagtattcgaaaa 1548775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 553434 - 553384
Alignment:
Q  19 ggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttg 68  Q
    |||||||| |||||||||||||  ||||||||||| |||||||||||||||    
T  553434 ggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttg 553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 1530097 - 1530143
Alignment:
Q  188 atcacgtcaaggttgcattgtttgctagtattctaaaagtgctttct 234  Q
    |||| ||||||| |||||||||| ||||||||||||||||| |||||    
T  1530097 atcatgtcaaggatgcattgtttcctagtattctaaaagtgatttct 1530143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 546880 - 546819
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgattt 67  Q
    |||||||||| ||||||||| |||||| ||||||  |||||| |||||||||||||| ||||    
T  546880 gtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 644786 - 644734
Alignment:
Q  19 ggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaa 70  Q
    |||||||| |||||||| ||||  ||||||||||| |||||||||||||||||    
T  644786 ggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaa 644734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 44575643 - 44575859
Alignment:
Q  23 tgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcattgatattttcaag 121  Q
    |||| |||||||||||||  ||||||||||  |||||| || |||||| | |||||  | | |||||| |||||||||||||||| |||||| |||||||    
T  44575643 tgaatcatgtggtagaaaactgcacacaaccgagagagctcaatttgagaaattgtgataatgtgcatcgtgatgttcttgcctcgttgatactttcaag 44575742  T
Q  122 gccatcattgagaaagtttacaactcctgatcgttatcgtttcaacaacaaggagatggaactcttatcacgtcaa-------ggttgcattgtttgcta 214  Q
    |||||||||||||||||| |||| |||  ||||| ||  |||||   || | ||||||||||||||||| ||||||       || ||||||||||||||    
T  44575743 gccatcattgagaaagttaacaattccatatcgtgatgatttcagtgaccaagagatggaactcttatcgcgtcaacgtcaagggatgcattgtttgcta 44575842  T
Q  215 gtattctaaaagtgctt 231  Q
    |||||| |||| |||||    
T  44575843 gtattcgaaaattgctt 44575859  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 45245217 - 45245348
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtag-aaagtgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    |||||||| | ||||||||| |||||||||| ||| ||||||||||| | ||||||| ||||||   | ||  |||||||||||  | ||||| ||| ||    
T  45245217 gtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtct 45245316  T
Q  106 cattgatattttcaaggccatcattgagaaag 137  Q
    |  || |||||||||||||||| |||| ||||    
T  45245317 cgatggtattttcaaggccatcgttgaaaaag 45245348  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 51113913 - 51114041
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcct 105  Q
    |||||||||| |||||||||||||||||||||||  |||||| |||||||||||||  |||| ||   |||| || ||||||||  | || || ||||||    
T  51113913 gtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcct 51114012  T
Q  106 cattgatattttcaaggccatcattgaga 134  Q
    || ||||||||||||||||||||||||||    
T  51114013 caatgatattttcaaggccatcattgaga 51114041  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 514861 - 514991
Alignment:
Q  8 tcacagagatgggagtgaagcatgtggt-agaaagtgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctc 106  Q
    ||||||||| |||||||||||||||||| | ||| ||||||| ||| ||||||||| |||| | |  ||||  | ||||||||| | ||||| ||||| |    
T  514861 tcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtgcattataatgttgttgcccc 514960  T
Q  107 attgatattttcaaggccatcattgagaaag 137  Q
    | || ||||||||||||||||||||||||||    
T  514961 aatggtattttcaaggccatcattgagaaag 514991  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 28935004 - 28934933
Alignment:
Q  19 ggagtgaagcatgtggtagaaagt-gcacacaactaagagagatcgatttgaaatattgtcttcaagtgcat 89  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||||| |  ||||| || ||||||||    
T  28935004 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 28934933  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 6415933 - 6415880
Alignment:
Q  7 gtcacagagatgggagtgaagcatgtggtaga-aagtgcacacaactaagagag 59  Q
    ||||||||  |||||||||| ||||||||||| || ||||||||||||||||||    
T  6415933 gtcacagaagtgggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

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