View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1245_low_33 (Length: 358)
Name: NF1245_low_33
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 15645921 - 15646249
Alignment:
| Q |
1 |
cagaaaccaattcaaggtgagctcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtcactatgataccctt |
100 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15645921 |
cagaaaccaattcaagttgatttcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtcactatgataccctt |
15646020 |
T |
|
| Q |
101 |
tatatgccctatttgatgtaccagattgaagatactagcatgccgatacaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15646021 |
tatatgccctatttgatgtaccagattgaagatactagcatgccgatgcaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatc |
15646120 |
T |
|
| Q |
201 |
aagctaggataaacactgagaagctctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15646121 |
aagctaggataaacactgagaagctctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgttta |
15646220 |
T |
|
| Q |
301 |
actcctcctttgaggagtagtgtttttca |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
15646221 |
actcctcctttgaggagtagtgtttttca |
15646249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 15655073 - 15655401
Alignment:
| Q |
1 |
cagaaaccaattcaaggtgagctcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtcactatgataccctt |
100 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||| |
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| T |
15655073 |
cagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaataaagtgtttctgtcattatcatcttcatatgttactatgataccctt |
15655172 |
T |
|
| Q |
101 |
tatatgccctatttgatgtaccagattgaagatactagcatgccgatacaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
15655173 |
aatatgccctatttgatgtacgagattgaagatactagcatgccgatgcaaaacagctatgtgtaatatagtttgatttttgctatccacatcccatatc |
15655272 |
T |
|
| Q |
201 |
aagctaggataaacactgagaagctctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |
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| T |
15655273 |
aagctaggataaacactgagaagctctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcattaatgattttattta |
15655372 |
T |
|
| Q |
301 |
actcctcctttgaggagtagtgtttttca |
329 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
15655373 |
gctcctcctttgatgagtagtgtttttca |
15655401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 15625526 - 15625851
Alignment:
| Q |
1 |
cagaaaccaattcaaggtgagctcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtcactatgataccctt |
100 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
15625526 |
cagaaaccaattcaagttgaacttgtggtgctaattttgcagccaagtgcaataaagtgtttctgtcatcatc---ttcaaatgtcactatgataccctt |
15625622 |
T |
|
| Q |
101 |
tatatgccctatttgatgtaccagattgaagatactagcatgccgatacaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatc |
200 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||| | ||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
15625623 |
tatatgccctatttgatgtataacattgtagatagcaacataccgatgcaatacagctatgtgtaatatagttcgatttttgctatccacatcccatatc |
15625722 |
T |
|
| Q |
201 |
aagctaggataaacactgagaagctctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgttta |
300 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||| |
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|
| T |
15625723 |
aagctaggataaacactaataagctccgataagaatccaaaatttccaacttctgcagcatcaaatattacctgagaaggttcatttatgattttattta |
15625822 |
T |
|
| Q |
301 |
actcctcctttgaggagtagtgtttttca |
329 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |
|
|
| T |
15625823 |
actccacctttgatgagtagtgtttttca |
15625851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 15494140 - 15494459
Alignment:
| Q |
1 |
cagaaaccaattcaaggtgagctcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtcactatgataccctt |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||||||||||||||||| |||| ||||||||||| ||||| |||| |||||||||||| | |||| |
|
|
| T |
15494140 |
cagaaaccaattcaagttgacctcgtcgtgctaattttgcagccaagtgtaatatagtgtttctgtcttcatc---ttcaaatgtcactatgacatcctt |
15494236 |
T |
|
| Q |
101 |
tatatgccctatttgatgtaccagattgaagatactagcatgccgatacaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
15494237 |
tatatgccctatttgatgtacgagattgaatatactagcatgccgatgcaaaacagctatgtgtaatatagttcgatttttgctatccatctcccatatc |
15494336 |
T |
|
| Q |
201 |
aagctaggataaacactgagaagctctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgttta |
300 |
Q |
| |
|
||||| |||| |||| | |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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|
| T |
15494337 |
aagcttggatgggcactaataagctccgataagaacccaaaatttccaacttcagcagcatcaaatattagttgagaaggtttatttatgatttcgttta |
15494436 |
T |
|
| Q |
301 |
actcctcctttgaggagtagtgt |
323 |
Q |
| |
|
|||| |||||||| | ||||||| |
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|
| T |
15494437 |
actcatcctttgatgtgtagtgt |
15494459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 307
Target Start/End: Original strand, 15605613 - 15605895
Alignment:
| Q |
25 |
gtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtcactatgataccctttatatgccctatttgatgtaccag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||| | |
|
|
| T |
15605613 |
gtggtgctaattttgcagccaagtgcaataaagtgtttctgtcttcatcattttcatatgtcaatatgaaaccctttatatgccccatttgatgtatgaa |
15605712 |
T |
|
| Q |
125 |
attgaagatactagcatgccgatacaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatcaagctaggataaacactgagaagc |
224 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
15605713 |
attgaagatactataatgccgattcaagacagctatgtgtaatatagttcgatttttgcaatccacatcccatatcaagctaggataaacactgataagc |
15605812 |
T |
|
| Q |
225 |
tctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgtttaactcctc |
307 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||| ||||| |||||| | ||||||||| |
|
|
| T |
15605813 |
tctgataagaatccataatttccaacttctgcagcatcaaaaatcagttgagaaggttgatttatgattttatgtaactcctc |
15605895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 15534742 - 15535043
Alignment:
| Q |
1 |
cagaaaccaattcaaggtgagctcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtcactatgataccctt |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||| |||||||| |||| |
|
|
| T |
15534742 |
cagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtgcaataaagtgtttcctttatcatcaa---catatgtcgctatgatatcctt |
15534838 |
T |
|
| Q |
101 |
tatatgccctatttgatgtaccagattgaagatactagcatgccgatacaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatc |
200 |
Q |
| |
|
||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| || |||||| ||||||||| |
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|
| T |
15534839 |
tatgtgccctatttgatgtacgacattgaagatactagcatgccgatgcaaaacagctatgtgtaatatcgttcgattttcgccatccacctcccatatc |
15534938 |
T |
|
| Q |
201 |
aagctaggataaacactgagaagctctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgttta |
300 |
Q |
| |
|
||||| |||| | |||| | |||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
15534939 |
aagcttggat-agcactaataagctccgataaaaaccaaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcattta |
15535037 |
T |
|
| Q |
301 |
actcct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
15535038 |
actcct |
15535043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 15517927 - 15518244
Alignment:
| Q |
1 |
cagaaaccaattcaaggtgagctcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtcactatgataccctt |
100 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||| |||| |||||||||| |||||| ||||| || |||| |||||||||||||| |||| |
|
|
| T |
15517927 |
cagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaataaactgtttccttcatcgtc---ttcaaatgtcactatgatatcctt |
15518023 |
T |
|
| Q |
101 |
tatatgccctatttgatgtaccagattgaagatactagcatgccgatacaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatc |
200 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| || |||||| ||||||||| |
|
|
| T |
15518024 |
tatatgccctatttgatgtatgacattgaagatactggcatgccgatgcaaaacagctatgtgtaatatagttcgattttcgcaatccacctcccatatc |
15518123 |
T |
|
| Q |
201 |
aagctaggataaacactgagaagctctgataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgttta |
300 |
Q |
| |
|
||||| |||| |||| | |||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
15518124 |
aagcttggatgggcactaataagctccgataagaacccaaaatttccaatttcagcagcatcaaatattagttgagaaggtttatttatgatttcattta |
15518223 |
T |
|
| Q |
301 |
actcctcctttgaggagtagt |
321 |
Q |
| |
|
|||||| |||||| ||||||| |
|
|
| T |
15518224 |
actccttctttgatgagtagt |
15518244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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