View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1245_low_35 (Length: 355)
Name: NF1245_low_35
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 32339955 - 32339815
Alignment:
| Q |
77 |
agcataggcgaagaggcatgaacataa--ggtttaacaa-caattagggacaccatataacatgaagaaactgaaagcatggatttcacattggcatgaa |
173 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32339955 |
agcaaaggcgaagcggcatgaacataacaggtttaacaaacaattagggacaacatataacatgaagaaactgaaagcatggatttcacattggcataaa |
32339856 |
T |
|
| Q |
174 |
cataacagatttcacactggtttaacaacataacaggtttc |
214 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32339855 |
cataacaggtttcacactggtttaacaacataacaggtttc |
32339815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 32339801 - 32339748
Alignment:
| Q |
200 |
aacataacaggtttcatattcggttaacaacagagcaggtttcacattgtcatg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32339801 |
aacataacaggtttcatattcggttaacaacatagcaggtttcacattgtcatg |
32339748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 32339814 - 32339758
Alignment:
| Q |
159 |
tcacattggcatgaacataacagatttcacactggtttaacaacataacaggtttca |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | | ||||||||||| ||||||||| |
|
|
| T |
32339814 |
tcacattggcatgaacataacaggtttcatattcggttaacaacatagcaggtttca |
32339758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University