View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_low_39 (Length: 339)

Name: NF1245_low_39
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_low_39
NF1245_low_39
[»] chr6 (6 HSPs)
chr6 (16-311)||(18238062-18238355)
chr6 (167-226)||(1748011-1748070)
chr6 (167-226)||(34571-34630)
chr6 (172-219)||(1747712-1747759)
chr6 (167-226)||(35199689-35199747)
chr6 (170-222)||(26291938-26291990)
[»] chr2 (26 HSPs)
chr2 (164-226)||(8197604-8197666)
chr2 (164-226)||(8202364-8202426)
chr2 (164-226)||(26670925-26670987)
chr2 (167-226)||(1626352-1626411)
chr2 (170-226)||(26784409-26784465)
chr2 (167-226)||(19024335-19024394)
chr2 (167-226)||(19336959-19337018)
chr2 (167-226)||(31254445-31254504)
chr2 (167-226)||(37481683-37481742)
chr2 (164-226)||(2906056-2906118)
chr2 (168-226)||(7431956-7432014)
chr2 (177-226)||(12026081-12026130)
chr2 (167-223)||(37452292-37452348)
chr2 (167-226)||(2377210-2377269)
chr2 (167-226)||(9496023-9496082)
chr2 (167-226)||(9556435-9556494)
chr2 (167-226)||(12141701-12141760)
chr2 (167-226)||(18188909-18188968)
chr2 (167-226)||(42149726-42149785)
chr2 (167-226)||(43832255-43832314)
chr2 (195-229)||(45077881-45077915)
chr2 (167-224)||(17581618-17581675)
chr2 (169-222)||(41779178-41779231)
chr2 (169-229)||(11412862-11412921)
chr2 (167-215)||(32402668-32402716)
chr2 (167-226)||(33504380-33504440)
[»] chr8 (24 HSPs)
chr8 (167-229)||(10079973-10080035)
chr8 (164-226)||(23023382-23023444)
chr8 (167-226)||(16917340-16917399)
chr8 (164-226)||(27037792-27037854)
chr8 (164-226)||(38391956-38392018)
chr8 (167-226)||(23492191-23492250)
chr8 (186-226)||(4011240-4011280)
chr8 (167-226)||(5908803-5908862)
chr8 (167-226)||(17491720-17491779)
chr8 (167-222)||(35643672-35643727)
chr8 (167-226)||(36069759-36069818)
chr8 (190-229)||(41971879-41971918)
chr8 (180-226)||(79184-79230)
chr8 (164-226)||(24399852-24399914)
chr8 (164-226)||(28169549-28169611)
chr8 (164-225)||(12963005-12963066)
chr8 (168-221)||(12966381-12966434)
chr8 (164-229)||(33076279-33076343)
chr8 (164-225)||(39760497-39760558)
chr8 (189-229)||(6483449-6483489)
chr8 (178-226)||(13589636-13589684)
chr8 (168-216)||(21425213-21425261)
chr8 (180-224)||(38483048-38483092)
chr8 (182-226)||(39388940-39388984)
[»] chr1 (20 HSPs)
chr1 (167-229)||(4590598-4590660)
chr1 (171-226)||(3818926-3818981)
chr1 (167-226)||(15577575-15577634)
chr1 (167-226)||(40416528-40416587)
chr1 (167-222)||(42501269-42501324)
chr1 (168-227)||(50636237-50636296)
chr1 (164-214)||(40920592-40920642)
chr1 (172-229)||(10584968-10585025)
chr1 (167-229)||(13827646-13827710)
chr1 (167-229)||(109059-109122)
chr1 (167-226)||(10569137-10569196)
chr1 (167-226)||(29577209-29577267)
chr1 (190-225)||(43375687-43375722)
chr1 (167-226)||(52532682-52532741)
chr1 (164-202)||(27887933-27887971)
chr1 (167-224)||(6025764-6025821)
chr1 (168-229)||(17233838-17233899)
chr1 (181-226)||(30834057-30834102)
chr1 (190-226)||(8676954-8676990)
chr1 (181-229)||(17640147-17640195)
[»] chr7 (23 HSPs)
chr7 (167-226)||(45601633-45601692)
chr7 (167-225)||(1569174-1569232)
chr7 (167-229)||(28542010-28542072)
chr7 (167-229)||(36101843-36101905)
chr7 (164-226)||(40139011-40139073)
chr7 (167-232)||(35922404-35922469)
chr7 (170-226)||(12966173-12966229)
chr7 (166-226)||(24549753-24549813)
chr7 (174-226)||(29653619-29653671)
chr7 (167-226)||(28858202-28858261)
chr7 (167-229)||(27893629-27893691)
chr7 (167-228)||(41578189-41578250)
chr7 (168-220)||(30200031-30200083)
chr7 (167-226)||(28627999-28628058)
chr7 (167-226)||(37976392-37976451)
chr7 (167-226)||(41483644-41483703)
chr7 (188-226)||(30144932-30144970)
chr7 (164-226)||(38135276-38135338)
chr7 (189-226)||(30664725-30664762)
chr7 (174-226)||(9191932-9191984)
chr7 (167-211)||(40008497-40008541)
chr7 (171-223)||(42177088-42177140)
chr7 (167-226)||(44401193-44401250)
[»] chr5 (14 HSPs)
chr5 (168-226)||(12576927-12576985)
chr5 (164-226)||(27998598-27998660)
chr5 (177-226)||(28186851-28186900)
chr5 (165-226)||(32759733-32759794)
chr5 (181-229)||(39322146-39322194)
chr5 (167-229)||(28005689-28005751)
chr5 (167-226)||(9235204-9235263)
chr5 (163-218)||(18698959-18699014)
chr5 (167-226)||(23980101-23980160)
chr5 (167-226)||(35615440-35615499)
chr5 (167-226)||(43475396-43475455)
chr5 (167-205)||(41808100-41808138)
chr5 (164-226)||(5303601-5303665)
chr5 (176-224)||(4460366-4460414)
[»] chr3 (22 HSPs)
chr3 (169-227)||(36304122-36304180)
chr3 (177-226)||(41452816-41452865)
chr3 (167-227)||(50237700-50237760)
chr3 (167-226)||(43308719-43308778)
chr3 (167-226)||(45289157-45289216)
chr3 (167-226)||(49841773-49841832)
chr3 (167-229)||(29601046-29601108)
chr3 (164-229)||(44571581-44571646)
chr3 (167-220)||(55244441-55244494)
chr3 (167-226)||(29475843-29475902)
chr3 (167-226)||(37228085-37228144)
chr3 (167-226)||(37228239-37228298)
chr3 (171-226)||(46431749-46431804)
chr3 (167-226)||(47804729-47804788)
chr3 (167-229)||(19758041-19758103)
chr3 (168-226)||(32385956-32386014)
chr3 (189-226)||(19162675-19162712)
chr3 (189-226)||(39600769-39600806)
chr3 (167-211)||(659697-659741)
chr3 (189-229)||(19737138-19737178)
chr3 (164-228)||(30723875-30723939)
chr3 (190-226)||(32052607-32052643)
[»] chr4 (33 HSPs)
chr4 (167-226)||(47147530-47147587)
chr4 (167-226)||(42639086-42639145)
chr4 (170-221)||(44047440-44047491)
chr4 (167-225)||(25574982-25575040)
chr4 (167-229)||(32339713-32339775)
chr4 (167-229)||(40018255-40018317)
chr4 (164-226)||(40654190-40654252)
chr4 (167-224)||(6843774-6843831)
chr4 (168-229)||(31403101-31403162)
chr4 (189-229)||(31459148-31459188)
chr4 (167-223)||(41192221-41192277)
chr4 (167-223)||(55388277-55388333)
chr4 (167-226)||(934497-934556)
chr4 (168-226)||(21879220-21879279)
chr4 (189-232)||(26025007-26025050)
chr4 (167-226)||(30621267-30621326)
chr4 (167-226)||(31043229-31043288)
chr4 (167-226)||(37042730-37042789)
chr4 (167-226)||(53540447-53540506)
chr4 (172-226)||(18966762-18966816)
chr4 (168-226)||(21214653-21214711)
chr4 (191-225)||(27049267-27049301)
chr4 (172-226)||(38903789-38903843)
chr4 (168-226)||(42293332-42293390)
chr4 (167-225)||(44384988-44385046)
chr4 (167-229)||(53518389-53518451)
chr4 (168-222)||(55007907-55007961)
chr4 (177-226)||(7544599-7544648)
chr4 (169-226)||(7681978-7682035)
chr4 (177-226)||(17666119-17666168)
chr4 (189-226)||(26024938-26024975)
chr4 (168-205)||(29209242-29209279)
chr4 (167-226)||(33225901-33225958)
[»] scaffold0373 (1 HSPs)
scaffold0373 (167-224)||(2367-2424)
[»] scaffold0180 (1 HSPs)
scaffold0180 (170-229)||(25512-25572)
[»] scaffold0018 (1 HSPs)
scaffold0018 (190-226)||(178509-178545)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 18238062 - 18238355
Alignment:
Q  16 attaaactttagacatattctatcattaattccaaaacagccataggtnnnnnnnnnnnnnnnnnntcattcttacctccatattgggtcagcaataggt 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||    
T  18238062 attaaacttcagacatattctatcattaattccaaaacagccataggtaaaaaaaaaaaaaaa---tcattcttacctccatattgggtcagcaataggt 18238158  T
Q  116 tgtggatgcacactagccgcagcacattcaccgttctcatcagccgacatattctatcatatatcatatttttatccaactcattaatctgtaaatcttt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18238159 tgtggatgcacactagccgcagcacattcaccgttctcatcagccgacgtattctatcatatatcatatttttatccaactcattaatctgtaaatcttt 18238258  T
Q  216 c-ttaatagtttttcaaataaatttacctatgtctttctcttttctctagtaaattgaatatccttcatctaagttactctttttaatacaaaatct 311  Q
    | |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18238259 ctttaatagttttttaaataaatttacctatgtctttctctttcctctagtaaattgaatatccttcatctgagttactctttttaatacaaaatct 18238355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 1748011 - 1748070
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||  |||||| |||||||||||||||||| ||||| ||||||| ||||||    
T  1748011 ttctatcatatactatatttctatccaactcattaatctctaaatttttcttagtagttt 1748070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 34571 - 34630
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||  ||||||||||||||||| || |||||||||||| ||||    
T  34571 ttctatcataaaccatatttcaatccaactcattaatctttagatctttcttaatggttt 34630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 1747712 - 1747759
Alignment:
Q  172 tcatatatcatatttttatccaactcattaatctgtaaatctttctta 219  Q
    ||||||||||||| |||||||||||||||||||| || ||| ||||||    
T  1747712 tcatatatcatatctttatccaactcattaatctctagatccttctta 1747759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 35199689 - 35199747
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||| ||||||| |||| ||||||||||||| || ||||||| |||||||||    
T  35199689 ttctatcatata-catatttctatctaactcattaatctctagatctttcctaatagttt 35199747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 26291990 - 26291938
Alignment:
Q  170 tatcatatatcatatttttatccaactcattaatctgtaaatctttcttaata 222  Q
    ||||||| | ||||||||||| |||||||| ||||| |||||||||| |||||    
T  26291990 tatcataaaccatatttttattcaactcatgaatctctaaatctttcataata 26291938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 8197604 - 8197666
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||    
T  8197604 atattctatcatatatcatatttctatccaactcattaatctttagatctttcttaatagttt 8197666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 8202364 - 8202426
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||    
T  8202364 atattctatcatatatcatatttctatccaactcattaatctttagatctttcttaatagttt 8202426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 26670987 - 26670925
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  26670987 atattctatcataaatcatattttggtccaactcattaatctctaaatctttcttaatagttt 26670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 1626411 - 1626352
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  1626411 ttctattatatatcatatttttatacaactcattaatctctagatctttcttaatagttt 1626352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 26784409 - 26784465
Alignment:
Q  170 tatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||| ||||||| ||| |||||||||||||| || |||||||||||||||||    
T  26784409 tatcatataccatatttctattcaactcattaatctctatatctttcttaatagttt 26784465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 19024394 - 19024335
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||| ||||  ||||| |||||||||||||||||| || |||||||||||||||||    
T  19024394 ttctatcaaatattgtatttatatccaactcattaatctttagatctttcttaatagttt 19024335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 19336959 - 19337018
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||  ||||||||||||||||| |||||||||||| |||||||    
T  19336959 ttctatcataaaccatatttcgatccaactcattaatctctaaatctttctttatagttt 19337018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 31254504 - 31254445
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||| ||||| ||||||||| ||| |||||||||||||| || |||||||||||||||||    
T  31254504 ttctgtcataaatcatatttctattcaactcattaatctctagatctttcttaatagttt 31254445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 37481683 - 37481742
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||| ||| ||||||||||||||||||||| |||  || |||||||||||||||||    
T  37481683 ttctatcaaataccatatttttatccaactcatttatcgctagatctttcttaatagttt 37481742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 2906056 - 2906118
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||| ||| | ||||||||||||||| |||| || || ||||||||||||||    
T  2906056 atattctatcatataacatttctttatccaactcattgatctctacatttttcttaatagttt 2906118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 7431956 - 7432014
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| ||||| ||||||||||| |||||||||||||| || ||| |||||||||||||    
T  7431956 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagttt 7432014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 12026081 - 12026130
Alignment:
Q  177 tatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| |||| ||||||||||||| || |||||||||||||||||    
T  12026081 tatcatatttctatcaaactcattaatctctagatctttcttaatagttt 12026130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 37452292 - 37452348
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatag 223  Q
    |||||||||| | ||||||| | |||||||||||||||| ||| |||||||||||||    
T  37452292 ttctatcataaaccatatttctgtccaactcattaatctctaattctttcttaatag 37452348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 2377269 - 2377210
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||| |||| ||  ||||||||||||| ||| ||||||||| ||||||||||    
T  2377269 ttctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 2377210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 9496082 - 9496023
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||  |||||||||||||| || ||||||||||| ||||||||    
T  9496082 ttctatcataaaccatatttggatccaactcattaacctctaaatctttctgaatagttt 9496023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 9556435 - 9556494
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | ||||| || ||||||||||||||||  || |||||||||||||||||    
T  9556435 ttctatcataaaccatatcttgatccaactcattaatcactagatctttcttaatagttt 9556494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 12141760 - 12141701
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||| |||||||  |||||| |||||||||| ||| |||||| |||||||||    
T  12141760 ttctatcatataccatatttggatccaagtcattaatctctaagtctttcctaatagttt 12141701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 18188968 - 18188909
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||| || |||||||||| |||||| ||||||||||| || |||||||| ||||||||    
T  18188968 ttctattatgtatcatatttctatccagctcattaatctctagatctttctgaatagttt 18188909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 42149726 - 42149785
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | ||||||| |||||| |||| |||||| || |||||||||||||||||    
T  42149726 ttctatcataaaccatatttctatccagctcaataatctctagatctttcttaatagttt 42149785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 43832314 - 43832255
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||| ||| |||||||  ||||||||||||||||||| || ||| |||||||||||||    
T  43832314 ttctataatacatcatatccttatccaactcattaatctctagatccttcttaatagttt 43832255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 45077915 - 45077881
Alignment:
Q  195 ctcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||| |||||||||||||||||||||||    
T  45077915 ctcattaatctctaaatctttcttaatagtttttc 45077881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 17581675 - 17581618
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagt 224  Q
    |||||||||| |||||||||  || |||||||| ||| |||||||||||| |||||||    
T  17581675 ttctatcataaatcatatttagattcaactcataaatatgtaaatctttcgtaatagt 17581618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 41779178 - 41779231
Alignment:
Q  169 ctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaata 222  Q
    |||||||||||||||| | ||| |||||||||||||| || |||||| ||||||    
T  41779178 ctatcatatatcatatctctattcaactcattaatctctagatcttttttaata 41779231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 11412921 - 11412862
Alignment:
Q  169 ctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||| | |||||||  ||||||||||||||||| | |||||||| ||||||||||||    
T  11412921 ctatcataaaccatatttggatccaactcattaatctct-aatctttcctaatagtttttc 11412862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 32402716 - 32402668
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatcttt 215  Q
    |||||||||||| | ||||| |||||||||||||||||| || ||||||    
T  32402716 ttctatcatataccttatttctatccaactcattaatctctagatcttt 32402668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 33504440 - 33504380
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcatt-aatctgtaaatctttcttaatagttt 226  Q
    |||||||||||| |||||||  |||||||| ||| ||||| || |||||||||||||||||    
T  33504440 ttctatcatataccatatttcaatccaacttattaaatctctagatctttcttaatagttt 33504380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 10079973 - 10080035
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||| ||||||||||| |||||||||||||||||| || ||||||||||| ||||||||    
T  10079973 ttctatcaaatatcatatttctatccaactcattaatctctagatctttcttaacagtttttc 10080035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 23023444 - 23023382
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||| ||||||    
T  23023444 atattctatcatatatcatgttcctatccaactcattaatctgtagatctttcttagtagttt 23023382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 16917399 - 16917340
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||| ||||||| |||||||||||||||||| |||||||| ||| |||||||    
T  16917399 ttctatcatataccatatttctatccaactcattaatctctaaatcttccttgatagttt 16917340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 27037854 - 27037792
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||| ||| ||||||| |||||||||||||||||| || ||||||| |||||||||    
T  27037854 atattctatcaaataccatatttctatccaactcattaatctttatatctttcctaatagttt 27037792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 38391956 - 38392018
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||| |||||||  |||| ||||||||||||||| |||||||||||| ||||    
T  38391956 atattctatcatataccatatttcgatcccactcattaatctgtagatctttcttaatggttt 38392018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23492250 - 23492191
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||||||| |||||||||||||||||  || |||||||| | ||||||    
T  23492250 ttctatcatatatcatatttctatccaactcattaatcgctacatctttctgagtagttt 23492191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 4011280 - 4011240
Alignment:
Q  186 tttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  4011280 tttatccaactcattaatctttagatctttcttaatagttt 4011240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 5908862 - 5908803
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| |||||||||| ||||||||||||||||  |  |||||| ||||||||||    
T  5908862 ttctatcataaatcatattttgatccaactcattaatccttggatcttttttaatagttt 5908803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 17491720 - 17491779
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | ||||||||  ||||||||||||||||  || ||||||||||||||||    
T  17491720 ttctatcataaaccatattttggtccaactcattaatctccaagtctttcttaatagttt 17491779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 35643672 - 35643727
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaata 222  Q
    |||||||||| | |||||||  ||||||||||||||||| || |||||||||||||    
T  35643672 ttctatcataaaccatatttcgatccaactcattaatctctagatctttcttaata 35643727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 36069818 - 36069759
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | ||||||| || ||||||||||||||| ||||| ||| ||||||||||    
T  36069818 ttctatcataaaccatatttctacccaactcattaatctctaaatatttgttaatagttt 36069759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 41971879 - 41971918
Alignment:
Q  190 tccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  41971879 tccaactcattaatctctaaatctttcttagtagtttttc 41971918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 79230 - 79184
Alignment:
Q  180 catatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||| |||||| ||||||||||| || |||||||||||||||||    
T  79230 catatttctatccagctcattaatctctagatctttcttaatagttt 79184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 24399852 - 24399914
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||| | |||||||  |||||||||||||||||  | ||| |||||||||||||    
T  24399852 atattctatcataaaccatatttcaatccaactcattaatctcgagatccttcttaatagttt 24399914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 28169611 - 28169549
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| ||||||| | |||||||  |||||||||||||||||  ||||||||| |||||||||    
T  28169611 atattttatcataaaccatatttgaatccaactcattaatctcaaaatctttcctaatagttt 28169549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 12963066 - 12963005
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtt 225  Q
    ||||||||| ||||||||||| |||||| ||||||||| ||| ||  ||||| |||||||||    
T  12963066 atattctattatatatcatatatttatctaactcattattctttaggtcttttttaatagtt 12963005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 12966381 - 12966434
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaat 221  Q
    ||||||||| | |||||||  || |||||||||||||| |||||||||||||||    
T  12966381 tctatcataaaccatatttgaattcaactcattaatctctaaatctttcttaat 12966434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 33076343 - 33076279
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||| ||| | ||||||||  | |||||||||||||| ||||||||| |||||||||||||    
T  33076343 atattctattataaaccatattttggtacaactcattaatctctaaatcttt-ttaatagtttttc 33076279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 39760497 - 39760558
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtt 225  Q
    |||||| |||||||||||||| | ||||||||| |||||||| || |  |||||||||||||    
T  39760497 atattcaatcatatatcatatctctatccaacttattaatctctagagttttcttaatagtt 39760558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 6483489 - 6483449
Alignment:
Q  189 atccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  6483489 atccaattcattaacctttaaatctttcttaatagtttttc 6483449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 13589684 - 13589636
Alignment:
Q  178 atcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| || |||||||||||||| |||||||||  |||||||||    
T  13589684 atcatattttgattcaactcattaatctttaaatcttttctaatagttt 13589636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 21425261 - 21425213
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttc 216  Q
    ||||||||| |||||||||  ||||||||||||||||| || |||||||    
T  21425261 tctatcataaatcatatttcgatccaactcattaatctctatatctttc 21425213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 38483048 - 38483092
Alignment:
Q  180 catatttttatccaactcattaatctgtaaatctttcttaatagt 224  Q
    ||||||| |||||||||||||||||| || |||||||| ||||||    
T  38483048 catatttctatccaactcattaatctctagatctttctgaatagt 38483092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 39388984 - 39388940
Alignment:
Q  182 tatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||    
T  39388984 tatttctatccaactcattaatctctagatctttcctaatagttt 39388940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 4590598 - 4590660
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||    
T  4590598 ttctatcacatatcatatatctatccaactcatcaatctataaatctttcttaatagtttttc 4590660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 3818926 - 3818981
Alignment:
Q  171 atcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||| | ||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  3818926 atcataaaccatatttctattcaactcattaatctctaaatctttcttaatagttt 3818981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 15577634 - 15577575
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||| ||||||||| | |||||||||||||||||| || ||| |||||||||||||    
T  15577634 ttctatcaaatatcatatctctatccaactcattaatctctatatccttcttaatagttt 15577575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 40416587 - 40416528
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||  ||||||||||||||||| || |||||||||||||||||    
T  40416587 ttctatcataaaccatatttcgatccaactcattaatctatagatctttcttaatagttt 40416528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 42501324 - 42501269
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaata 222  Q
    |||||||||||  ||||||| |||||||||||||||||| || |||||||||||||    
T  42501324 ttctatcatattccatatttctatccaactcattaatctatagatctttcttaata 42501269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 50636296 - 50636237
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttt 227  Q
    ||||||||||| ||||||||||||||||||| |||||| || || | |||||||||||||    
T  50636296 tctatcatataccatatttttatccaactcaataatctctagatttatcttaatagtttt 50636237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 40920592 - 40920642
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctt 214  Q
    ||||||||||||||| ||||||| |||||||||||||||||| || |||||    
T  40920592 atattctatcatataccatatttctatccaactcattaatctctagatctt 40920642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 10584968 - 10585025
Alignment:
Q  172 tcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||||| | | |||||||||||||||| |  ||||||||||||||||||||    
T  10584968 tcatatatcatatctctgtccaactcattaatctctggatctttcttaatagtttttc 10585025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 13827646 - 13827710
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaa--tctttcttaatagtttttc 229  Q
    |||||||||||| ||||||| |||||||||||||||||| || |  | |||||||||||||||||    
T  13827646 ttctatcatataccatatttctatccaactcattaatctctagacttttttcttaatagtttttc 13827710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 109059 - 109122
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttct-taatagtttttc 229  Q
    |||||||||| ||||||| |||||||||||||||||| | || |||||||| | ||||||||||    
T  109059 ttctatcatacatcatatatttatccaactcattaatgtctatatctttctcttatagtttttc 109122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 10569137 - 10569196
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||  |||||| |||||| || |||||||| || |||||||||||||||||    
T  10569137 ttctatcatatacgatatttctatccagcttattaatctctagatctttcttaatagttt 10569196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 29577209 - 29577267
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||| ||||| ||||||||||| || |||||||||||||||||    
T  29577209 ttctatcata-accatattttgatccagctcattaatctctagatctttcttaatagttt 29577267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 43375687 - 43375722
Alignment:
Q  190 tccaactcattaatctgtaaatctttcttaatagtt 225  Q
    |||||||||||||||| |||||||||||||||||||    
T  43375687 tccaactcattaatctctaaatctttcttaatagtt 43375722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 52532682 - 52532741
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | ||||||||  |||||||||||||| | |||||||||| |||||||||    
T  52532682 ttctatcataaaccatattttgttccaactcattaatttctaaatctttcctaatagttt 52532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 27887933 - 27887971
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaa 202  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  27887933 atattctatcatatatcatattttggtccaactcattaa 27887971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 6025821 - 6025764
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagt 224  Q
    |||||||| ||| ||||||| |||||||||||||||||| || |||||| ||| ||||    
T  6025821 ttctatcagataccatatttctatccaactcattaatctctagatcttttttactagt 6025764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 17233838 - 17233899
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||| ||||||  ||||||||||| |||||  |  ||||||||||||||||||||    
T  17233838 tctatcatataccatattcctatccaactcaataatcgctggatctttcttaatagtttttc 17233899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 30834057 - 30834102
Alignment:
Q  181 atatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||| |||||||||||||||||| || ||||||| |||||||||    
T  30834057 atatttctatccaactcattaatctctagatctttcgtaatagttt 30834102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 8676954 - 8676990
Alignment:
Q  190 tccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  8676954 tccaactcattaatctctaaatcttttttaatagttt 8676990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 17640147 - 17640195
Alignment:
Q  181 atatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||||||||||||||||| || ||| ||| | ||||||||||    
T  17640147 atatttttatccaactcattaatctctagatccttccttatagtttttc 17640195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 45601692 - 45601633
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| |||||||||| ||||||||||||||||| || |||||||||||| ||||    
T  45601692 ttctatcataaatcatattttgatccaactcattaatctctagatctttcttaatggttt 45601633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 1569232 - 1569174
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtt 225  Q
    |||||||||| | |||||||| ||||||||||||||||| || ||||||||||||||||    
T  1569232 ttctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagtt 1569174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 28542010 - 28542072
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||||| | |||| ||  ||||||||||||||||| |||||||||||||||||||||||    
T  28542010 ttctatcataaaccatagttcaatccaactcattaatctctaaatctttcttaatagtttttc 28542072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 36101843 - 36101905
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||||| | |||||||| ||||||||||||||||| |||||||||| ||||| ||||||    
T  36101843 ttctatcataaaccatattttgatccaactcattaatctataaatctttcataataatttttc 36101905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 40139011 - 40139073
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||| |||||||| |||| ||| ||||||||| || |||||||||||||||||    
T  40139011 atattctatcatatgtcatatttctatcaaacgcattaatctctagatctttcttaatagttt 40139073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 35922469 - 35922404
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttcaaa 232  Q
    |||||||||| |||||||||  || ||||||||||| || |||||||||||||||||||| |||||    
T  35922469 ttctatcataaatcatatttagattcaactcattaacctctaaatctttcttaatagtttctcaaa 35922404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 12966229 - 12966173
Alignment:
Q  170 tatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||| ||||||| ||||||| |||||||||| ||||| ||||||||||||||    
T  12966229 tatcatataccatatttctatccaaatcattaatctctaaatatttcttaatagttt 12966173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 24549753 - 24549813
Alignment:
Q  166 attctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||| ||| |||||||  ||||||||||||||||| || |||||||||||||||||    
T  24549753 attctatcaaataccatatttcaatccaactcattaatctctagatctttcttaatagttt 24549813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 29653619 - 29653671
Alignment:
Q  174 atatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||||||    
T  29653619 atatatcatatttctatctaactcattaatctctagatctttcttaatagttt 29653671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 28858261 - 28858202
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||  |||||| ||||||||| |||||||| || |||||||||||||||||    
T  28858261 ttctatcatataaaatatttctatccaacttattaatctctagatctttcttaatagttt 28858202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 27893629 - 27893691
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||||| | |||||||   |||| ||||||||||| |||||||||||||||||||||||    
T  27893629 ttctatcataaaacatatttcggtccagctcattaatctctaaatctttcttaatagtttttc 27893691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 41578189 - 41578250
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttttt 228  Q
    |||||||||||||||||| | ||||||||||| |||||| || || |||||||| |||||||    
T  41578189 ttctatcatatatcatatctctatccaactcactaatctctatatgtttcttaacagttttt 41578250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 30200031 - 30200083
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaa 220  Q
    ||||||||||| ||||||| |||| ||||||||||||| || |||||||||||    
T  30200031 tctatcatataccatatttatatcaaactcattaatctctagatctttcttaa 30200083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 28627999 - 28628058
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | || ||||  ||||||||||||||||| |||||||||| |||||||||    
T  28627999 ttctatcataaaccacatttgcatccaactcattaatctctaaatctttcctaatagttt 28628058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 37976451 - 37976392
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||  ||||||||||||||||| |||||||||| || ||||||    
T  37976451 ttctatcataaaccatatttggatccaactcattaatctctaaatctttcatattagttt 37976392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 41483703 - 41483644
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| |||||||||||| | |||||||||| ||||| | || |||||||||||||||||    
T  41483703 ttctaccatatatcatatctatatccaactcgttaatttctagatctttcttaatagttt 41483644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 30144970 - 30144932
Alignment:
Q  188 tatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||||| || |||||||||||||||||    
T  30144970 tatccaactcattaatctctagatctttcttaatagttt 30144932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 38135276 - 38135338
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||   |||||||   |||||||||||||||| ||||||||| ||||||||||    
T  38135276 atattctatcataacccatatttcggtccaactcattaatctctaaatcttttttaatagttt 38135338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 30664762 - 30664725
Alignment:
Q  189 atccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||||| || |||||||||||||||||    
T  30664762 atccaactcattaatctctagatctttcttaatagttt 30664725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 9191984 - 9191932
Alignment:
Q  174 atatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||| |||| || | |||||||| || |||||||||||||||||    
T  9191984 atatatcatatttctatcaaatttattaatctctagatctttcttaatagttt 9191932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 40008497 - 40008541
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaat 211  Q
    |||||||||||||||| | | |||||||||||||||||| |||||    
T  40008497 ttctatcatatatcatgtctctatccaactcattaatctataaat 40008541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 42177088 - 42177140
Alignment:
Q  171 atcatatatcatatttttatccaactcattaatctgtaaatctttcttaatag 223  Q
    |||||||| |||||||||||  |||||||| |||| || ||||||||||||||    
T  42177088 atcatataccatatttttatgaaactcatttatctctagatctttcttaatag 42177140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 44401193 - 44401250
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  44401193 ttctatcataaaacatattttgat--aactcgttaatctctaaatctttcttaatagttt 44401250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 12576927 - 12576985
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||| ||||||| ||| |||||||||||||| || |||||||||||||||||    
T  12576927 tctatcatataccatatttctattcaactcattaatctctagatctttcttaatagttt 12576985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 27998660 - 27998598
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||||||| ||  |||| |||||||||||||||| |||||||||| ||||||    
T  27998660 atattctatcatatatcatgttcctatctaactcattaatctgtagatctttcttagtagttt 27998598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 28186851 - 28186900
Alignment:
Q  177 tatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  28186851 tatcatatctctatccaactcattaatctctaaatctttcttaatagttt 28186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 32759794 - 32759733
Alignment:
Q  165 tattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| |||||| |||||||||| | ||||||||||| ||| ||||||||||||||||||||    
T  32759794 tattccatcataaatcatattttgaaccaactcattattctataaatctttcttaatagttt 32759733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 39322146 - 39322194
Alignment:
Q  181 atatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||    
T  39322146 atatttctatccaactcattaatctttagatctttcttaatagtttttc 39322194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 28005751 - 28005689
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||| ||||||||||   |||| ||||||||||||| || ||||||||||||||||||||    
T  28005751 ttctatcgtatatcatatccctatcaaactcattaatctctagatctttcttaatagtttttc 28005689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 9235263 - 9235204
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||  ||||| ||||||||||| || |||||||||||||||||    
T  9235263 ttctatcataaaccatatttcgatccagctcattaatctctatatctttcttaatagttt 9235204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 18699014 - 18698959
Alignment:
Q  163 catattctatcatatatcatatttttatccaactcattaatctgtaaatctttctt 218  Q
    ||||||| |||||||| ||||||| ||||||||||| |||||| || |||||||||    
T  18699014 catattcaatcatataacatatttctatccaactcactaatctctagatctttctt 18698959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 23980160 - 23980101
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||  ||||||||||||||||| |||||| |||| ||||||||    
T  23980160 ttctatcataaaccatatttagatccaactcattaatctataaatcattctcaatagttt 23980101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 35615499 - 35615440
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| |  ||||||||||||||||||||||||| ||||| ||| | ||||||||    
T  35615499 ttctatcataaactatatttttatccaactcattaatctctaaatttttatgaatagttt 35615440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 43475455 - 43475396
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| |||| |||||||||  ||||||||||||||||| |  |||||||||||||||||    
T  43475455 ttctaccataaatcatatttcgatccaactcattaatctctggatctttcttaatagttt 43475396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 41808138 - 41808100
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatct 205  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  41808138 ttctatcatacatcatatttatatccaactcattaatct 41808100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 5303665 - 5303601
Alignment:
Q  164 atattctatcatatatcatattttt--atccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||| ||||| |||  |||||||||||||| || ||||||||| | ||||||||    
T  5303665 atattctatcatataccatatatttctatccaactcattaaactctaaatctttttcaatagttt 5303601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 4460414 - 4460366
Alignment:
Q  176 atatcatatttttatccaactcattaatctgtaaatctttcttaatagt 224  Q
    ||||| ||||| |||||||||||||||||| ||  ||||||||||||||    
T  4460414 atatcgtatttctatccaactcattaatctctaggtctttcttaatagt 4460366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 36304180 - 36304122
Alignment:
Q  169 ctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttt 227  Q
    |||||||| | |||||||| ||||||||||||||||| || ||||||||||||||||||    
T  36304180 ctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagtttt 36304122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 41452816 - 41452865
Alignment:
Q  177 tatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||| |||||||||||||||||||| || |||||||||||||||||    
T  41452816 tatcatatatttatccaactcattaatctctagatctttcttaatagttt 41452865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 50237700 - 50237760
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttt 227  Q
    ||||||||||||  |||||| ||||||||||| |||||| | |||||||||||||||||||    
T  50237700 ttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 50237760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 43308778 - 43308719
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||||| | ||||||||| |||||||| || || ||||||||||||||    
T  43308778 ttctatcatatatcatatctctatccaactgattaatctctagatttttcttaatagttt 43308719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 45289157 - 45289216
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||  ||||||||||||||||| |||||||||| |||||||||    
T  45289157 ttctatcataaaccatatttggatccaactcattaatctctaaatctttcctaatagttt 45289216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 49841832 - 49841773
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||| |||||||  ||||||||||||||||| || |||||| ||||||||||    
T  49841832 ttctatcatataccatatttcgatccaactcattaatctttagatctttgttaatagttt 49841773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 29601108 - 29601046
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||||| |  ||||||  ||||||||||||||||| ||||||||||||||||| |||||    
T  29601108 ttctatcataaactatatttgaatccaactcattaatctctaaatctttcttaatagcttttc 29601046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 44571646 - 44571581
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||||| | |||||||  ||||||||||||||||| ||||| |||| | ||||||||||    
T  44571646 atattctatcataaaccatatttggatccaactcattaatctctaaatatttccttatagtttttc 44571581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 55244494 - 55244441
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaa 220  Q
    |||||||||||| ||||||| |||||||||||||||||| || || ||||||||    
T  55244494 ttctatcatataccatatttctatccaactcattaatctctagatttttcttaa 55244441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 29475902 - 29475843
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| |  ||||||  ||||||||||||||||| || |||||||||||||||||    
T  29475902 ttctatcataaacaatatttcaatccaactcattaatctctagatctttcttaatagttt 29475843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 37228144 - 37228085
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| ||| |||||||| |||||| ||||||||||| | ||| ||||||||||||||||    
T  37228144 ttctaccatttatcatatctttatctaactcattaatttctaagtctttcttaatagttt 37228085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 37228298 - 37228239
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| ||| |||||||| |||||||||||| ||||| | ||| ||||||||||||||||    
T  37228298 ttctaccatttatcatatctttatccaactcgttaatttctaagtctttcttaatagttt 37228239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 46431749 - 46431804
Alignment:
Q  171 atcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||| |||| | |||||||||||||||||| || |||||| ||||||||||    
T  46431749 atcatatataatatctctatccaactcattaatctctagatcttttttaatagttt 46431804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 47804729 - 47804788
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||| ||| | | ||| |||||||||||||| ||||||||||||||| ||||    
T  47804729 ttctatcatatagcatgtctctattcaactcattaatctctaaatctttcttaatcgttt 47804788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 19758103 - 19758041
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||||| | ||||||   ||||||||||||||||| ||||| |||| ||||||||||||    
T  19758103 ttctatcataaaccatattgagatccaactcattaatctctaaatatttcctaatagtttttc 19758041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 32385956 - 32386014
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||| ||||||||||||||||| || | ||||| || ||||| ||||||||||||||    
T  32385956 tctatcttatatcatatttttatctaatttattaacctataaatatttcttaatagttt 32386014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 19162675 - 19162712
Alignment:
Q  189 atccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  19162675 atccaactcattaatctctaaatctttcctaatagttt 19162712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 39600769 - 39600806
Alignment:
Q  189 atccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||| || ||||||||||||||||||||    
T  39600769 atccaactcattaacctctaaatctttcttaatagttt 39600806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 659741 - 659697
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaat 211  Q
    ||||||||||||| ||||   ||||||||||||||||||||||||    
T  659741 ttctatcatatataatatccctatccaactcattaatctgtaaat 659697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 19737178 - 19737138
Alignment:
Q  189 atccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||||||||| ||||| |||| ||||||||||||    
T  19737178 atccaactcattaatctctaaatatttcctaatagtttttc 19737138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 30723875 - 30723939
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttttt 228  Q
    |||||||||||||||| |||| | |||| ||||| ||| ||| |||||| || ||||||||||||    
T  30723875 atattctatcatatattatatatctatcaaactcgttattctttaaatcatttttaatagttttt 30723939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 32052607 - 32052643
Alignment:
Q  190 tccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||| |||||||||| |||||||||    
T  32052607 tccaactcattaatctataaatctttcctaatagttt 32052643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 47147587 - 47147530
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||||| |  ||||||||||||||||| || |||||||||||||||||    
T  47147587 ttctatcatatatcatatct--atccaactcattaatctctagatctttcttaatagttt 47147530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 42639086 - 42639145
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||| ||| ||||||| |||||||||||||||||  || |||||||||||||||||    
T  42639086 ttctatcaaataccatatttctatccaactcattaatcgctagatctttcttaatagttt 42639145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 44047440 - 44047491
Alignment:
Q  170 tatcatatatcatatttttatccaactcattaatctgtaaatctttcttaat 221  Q
    ||||||||| |||||| ||||||||||||||||||| || ||||||||||||    
T  44047440 tatcatataccatattattatccaactcattaatctctagatctttcttaat 44047491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 25575040 - 25574982
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtt 225  Q
    |||||||||| | |||||||  ||||||||||||||||| || ||||||||||||||||    
T  25575040 ttctatcataaaccatatttcgatccaactcattaatctctagatctttcttaatagtt 25574982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 32339775 - 32339713
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||||||||||||| | |||||||||| ||||||| ||  | |||||||||||||||||    
T  32339775 ttctatcatatatcatatctctatccaactcgttaatctctaggtatttcttaatagtttttc 32339713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 40018255 - 40018317
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||||||||||   ||||||||||||| |||| || ||||||||||| ||||||||    
T  40018255 ttctatcatatatcatatccctatccaactcattgatctctagatctttcttaacagtttttc 40018317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 40654190 - 40654252
Alignment:
Q  164 atattctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||| ||||| ||||||||||| |||| ||||||||||||| || ||||||||| |||||||    
T  40654190 atattatatcaaatatcatatttatatctaactcattaatctttacatctttcttgatagttt 40654252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 6843831 - 6843774
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagt 224  Q
    |||||| ||||| ||||||| |||| ||||||||||||| || |||||||||||||||    
T  6843831 ttctattatataacatatttctatcaaactcattaatctctagatctttcttaatagt 6843774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 31403101 - 31403162
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||| || |||| ||||||||| |||||||| || ||||||| ||||||||||||    
T  31403101 tctatcatataccacatttctatccaactaattaatctctagatctttcataatagtttttc 31403162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 31459188 - 31459148
Alignment:
Q  189 atccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  31459188 atccaactcattaatctctaaatctttcctaatagtttttc 31459148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 41192277 - 41192221
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatag 223  Q
    ||||| |||||| ||||||| |||||||||||||||||| || ||||||||| ||||    
T  41192277 ttctaccatataccatatttctatccaactcattaatctctagatctttctttatag 41192221  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 55388277 - 55388333
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatag 223  Q
    |||||||||| |||||||||  ||| |||||||||||||  ||||||||||||||||    
T  55388277 ttctatcataaatcatatttcgatctaactcattaatctccaaatctttcttaatag 55388333  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 934497 - 934556
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||||    |||||||||||||||||| || | |||||||||||||||    
T  934497 ttctatcatatatcataaccctatccaactcattaatctctagaactttcttaatagttt 934556  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 21879220 - 21879279
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttctt-aatagttt 226  Q
    ||||||||||||||||| | ||||||||||||| |||| || ||||||||| ||||||||    
T  21879220 tctatcatatatcatatctctatccaactcattcatctctagatctttcttgaatagttt 21879279  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 26025007 - 26025050
Alignment:
Q  189 atccaactcattaatctgtaaatctttcttaatagtttttcaaa 232  Q
    ||||||||||||||||| || ||||||||||||||||| |||||    
T  26025007 atccaactcattaatctctagatctttcttaatagtttctcaaa 26025050  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 30621267 - 30621326
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||   |||||| ||||||||| ||||||||||||||||||||    
T  30621267 ttctatcataaaccatatttcggtccaacacattaatctctaaatctttcttaatagttt 30621326  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 31043288 - 31043229
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||| | | |||||||  ||||||||||||||||| |||||||||| |||||||||    
T  31043288 ttctatcacaaaccatatttggatccaactcattaatctctaaatctttcctaatagttt 31043229  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 37042730 - 37042789
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||| ||| | ||||| ||||||||||| |||||| || |||||||||||||||||    
T  37042730 ttctatcaaataccgtatttctatccaactcaataatctctagatctttcttaatagttt 37042789  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 53540506 - 53540447
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | ||||||||| ||||||||||||||||  || |||||| |||||||||    
T  53540506 ttctatcataaaccatatttttgtccaactcattaatctccaagtctttcctaatagttt 53540447  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 18966816 - 18966762
Alignment:
Q  172 tcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||| |  ||||| |||| ||||||||| |||||||||||||||||    
T  18966816 tcatatatcatatctcaatccagctcactaatctgtagatctttcttaatagttt 18966762  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 21214653 - 21214711
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||| ||||||||| | |||||||||||| ||| || | |||||||||||||||    
T  21214653 tctatcatacatcatatttctctccaactcattactctatagacctttcttaatagttt 21214711  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 27049267 - 27049301
Alignment:
Q  191 ccaactcattaatctgtaaatctttcttaatagtt 225  Q
    ||||||||||||||| |||||||||||||||||||    
T  27049267 ccaactcattaatctataaatctttcttaatagtt 27049301  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 38903789 - 38903843
Alignment:
Q  172 tcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||| | |||| ||||||||||||| ||  ||||||||||||||||    
T  38903789 tcatatatcatatctctatcaaactcattaatctttaggtctttcttaatagttt 38903843  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 42293332 - 42293390
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||| ||||| | |||| ||||||||||| | || |||||||||||||||||    
T  42293332 tctatcatataccatatgtctatctaactcattaatttctagatctttcttaatagttt 42293390  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 44385046 - 44384988
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtt 225  Q
    |||||||||| | ||||||  ||||||||| |||||||| || ||||||||||||||||    
T  44385046 ttctatcataaaccatattaatatccaacttattaatctctagatctttcttaatagtt 44384988  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 53518389 - 53518451
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagtttttc 229  Q
    |||||||||| | |||||||  |||||||||||||| || |||||||||| || |||||||||    
T  53518389 ttctatcataaaccatatttagatccaactcattaacctctaaatctttcctattagtttttc 53518451  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 55007961 - 55007907
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaata 222  Q
    ||||||||| | |||||||   |||||||||||||||| ||||||||||||||||    
T  55007961 tctatcataaaccatatttcggtccaactcattaatctctaaatctttcttaata 55007907  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 7544599 - 7544648
Alignment:
Q  177 tatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||  ||| ||||||||||||| || |||||||||||||||||    
T  7544599 tatcatatttcgatcaaactcattaatctctagatctttcttaatagttt 7544648  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 7681978 - 7682035
Alignment:
Q  169 ctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| ||||||| |||| ||||||||||||| || || |||||| |||||||    
T  7681978 ctatcatataccatatttctatctaactcattaatctatagatttttcttgatagttt 7682035  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 17666119 - 17666168
Alignment:
Q  177 tatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||| ||| ||||||||||||| |||||||||  |||||||||    
T  17666119 tatcatattttcatctaactcattaatctataaatcttttctaatagttt 17666168  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 26024938 - 26024975
Alignment:
Q  189 atccaactcattaatctgtaaatctttcttaatagttt 226  Q
    ||||||||||||||||| || |||||||||||||||||    
T  26024938 atccaactcattaatctctagatctttcttaatagttt 26024975  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 29209242 - 29209279
Alignment:
Q  168 tctatcatatatcatatttttatccaactcattaatct 205  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  29209242 tctatcatataccatatttctatccaactcattaatct 29209279  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 33225901 - 33225958
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||| | |||||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  33225901 ttctatcataaaacatattttgat--aactcgttaatctctaaatctttcttaatagttt 33225958  T

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Target: scaffold0373 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 2367 - 2424
Alignment:
Q  167 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttcttaatagt 224  Q
    |||||| ||||| ||||||| |||| ||||||||||||| || |||||||||||||||    
T  2367 ttctattatataacatatttctatcaaactcattaatctctagatctttcttaatagt 2424  T

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Target: scaffold0180 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 25512 - 25572
Alignment:
Q  170 tatcatatatcatatttttatccaactcattaatctgtaaatc-tttcttaatagtttttc 229  Q
    ||||||||| | ||||| |||||||||||||||||| |||||| ||| |||||||||||||    
T  25512 tatcatataacttatttctatccaactcattaatctctaaatcattttttaatagtttttc 25572  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 178509 - 178545
Alignment:
Q  190 tccaactcattaatctgtaaatctttcttaatagttt 226  Q
    |||||||||||||||| || |||||||||||||||||    
T  178509 tccaactcattaatctctatatctttcttaatagttt 178545  T

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