View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_4 (Length: 604)
Name: NF1245_low_4
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 7811990 - 7811852
Alignment:
| Q |
49 |
gtatggtttatgaatgcttgacattttgtttgaaatcctaacaatgatcgattcaatgtcatttctcataagtatatgctgaaagttatgacttatgagt |
148 |
Q |
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| T |
7811990 |
gtatggtttatgaatgcttgac----tgtttgaaatcctaacaatgatcgattcaatgtcatttctcataagtatatgcttaaagttatgacttatgagt |
7811895 |
T |
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| Q |
149 |
atataagcactatataagaaacccacaca-tcctaacaattgt |
190 |
Q |
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| T |
7811894 |
atataagcactatataagaaacccacacattcctaacaattgt |
7811852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 315 - 479
Target Start/End: Complemental strand, 7811733 - 7811571
Alignment:
| Q |
315 |
atagctgccaataaacataattattgcaaaatacataactatcgcaaattttaggtnnnnnnnnnngaagttactttttgtactttcaaagttaaaattt |
414 |
Q |
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| T |
7811733 |
atagctgccaataaacataattattgcaaaatacataactatcgcaaattttaggtaaaaaaaaa--aagttactttttgtactttcaaagttaaaattt |
7811636 |
T |
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| Q |
415 |
tcagtttaannnnnnnagtgagttcatgttgtgactaatgtggaaataaatatgaaatgaaatgg |
479 |
Q |
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| T |
7811635 |
tcagtttaatttttttagtgagttcatgttgtgactaatgtggaaataaatatgaaatgaaatgg |
7811571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 7811572 - 7811507
Alignment:
| Q |
527 |
ggtccaatttcttcgtatttgtttgtcttatatatggacaaattattgcatattattttccatttt |
592 |
Q |
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| T |
7811572 |
ggtccaatttcttcgtatttgtttgtcttgtatatggacaaattattgcatattattttccatttt |
7811507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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