View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_low_41 (Length: 334)

Name: NF1245_low_41
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_low_41
NF1245_low_41
[»] chr5 (2 HSPs)
chr5 (1-314)||(36419571-36419884)
chr5 (17-314)||(26102477-26102773)
[»] chr3 (3 HSPs)
chr3 (15-314)||(52344260-52344559)
chr3 (120-314)||(32516961-32517155)
chr3 (122-186)||(12950112-12950176)
[»] chr2 (2 HSPs)
chr2 (5-314)||(33412071-33412380)
chr2 (120-169)||(3156225-3156274)
[»] chr8 (2 HSPs)
chr8 (5-314)||(12677898-12678207)
chr8 (87-169)||(25720807-25720889)
[»] chr1 (2 HSPs)
chr1 (16-314)||(750694-750992)
chr1 (120-163)||(24662221-24662264)
[»] chr7 (1 HSPs)
chr7 (198-314)||(39709579-39709699)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 36419884 - 36419571
Alignment:
Q  1 ctatccgtggtgatacggtacgggaagcttatcgttttctcactgataatggtaatgtggtggataggactctggttgaagatgtttggcataagagcat 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36419884 ctatccgtggttatacggtacgggaagcttatcgttttctcactgataatggtaatgtggtggataagactctggttgaagatgtttggcataagagcat 36419785  T
Q  101 accctctaaggtgccactatttgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttctgttagctaactcg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36419784 accctctaaggtgtcactatttgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttctgttagctaactcg 36419685  T
Q  201 gtttgtgtgtcaggttgcggtgcctatgaaaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgcattggttag 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36419684 gtttgtgtgtcaggttgtggtgcctatgaaaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgcattggttag 36419585  T
Q  301 gtttatctgtggtg 314  Q
    ||||||||||||||    
T  36419584 gtttatctgtggtg 36419571  T

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Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 26102477 - 26102773
Alignment:
Q  17 ggtacgggaagcttatcgttttctcactgataatggtaatgtggtggataggactctggttgaagatgtttggcataagagcataccctctaaggtgcca 116  Q
    |||||||||||||||||  ||||||||| || |||| ||    |||||||||||  ||||||| |||| | |||| ||||| ||||||||||||||| ||    
T  26102477 ggtacgggaagcttatctctttctcactaatgatggcaactctgtggataggacagtggttgatgatgct-ggcaaaagagtataccctctaaggtgtca 26102575  T
Q  117 ctatttgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttctgttagctaactcggtttgtgtgtcaggtt 216  Q
     | ||||||||||||||| | |||||||||||||| |||||||| ||||| || || |||||  ||||| || ||||   |||||||||||||||||| |    
T  26102576 gtgtttgtgtggcgccttctccggaatagacttcctactagagataactttgtgcaacggcgaattcttttgatagcaggctcggtttgtgtgtcaggat 26102675  T
Q  217 gcggtgcctatgaaaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgcattggttaggtttatctgtggtg 314  Q
    ||||||  ||||||||||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||    
T  26102676 gcggtgattatgaaaccgcaactcacttattttgtgtctgtaatatttttagttcgttttgggatcatattttgaattggttaggtttatttgtggtg 26102773  T

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Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 52344559 - 52344260
Alignment:
Q  15 acggtacgggaagcttatcgttttctcactgataatggtaatgtggtggataggactctggttgaagatgtttggcataagagcataccctctaaggtgc 114  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  52344559 acggtacgggaagcttatcgttttctcactgataatggtaacgatgtggataggactctggttgaagatgtttggcatatgagcataccctctaaggtgt 52344460  T
Q  115 cactatttgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttctgttagctaactcggtttgtgtgtcagg 214  Q
    ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52344459 cactatttgtgtggcaccttttccggaatagacttcctactagagacaacttggttcatcggcgtgttcttctgttagctgactcggtttgtgtgtcagg 52344360  T
Q  215 ttgcggtgcctatgaaaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgcattggttaggtttatctgtggtg 314  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  52344359 ttgcggtgcttatgaaaccgcaaatcatttgttttgcgtctgtaatatttttagtacgctttgggatcatattttgcattggttaggcttatatgtggtg 52344260  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 314
Target Start/End: Complemental strand, 32517155 - 32516961
Alignment:
Q  120 tttgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttctgttagctaactcggtttgtgtgtcaggttgcg 219  Q
    ||||||||||||||  |  ||||||||||||| ||||||||||| ||||| || || || |||| | |||||||  |||||| ||||||||| ||||| |    
T  32517155 tttgtgtggcgcctcctctggaatagacttcctactagagacaatttggtgcaacgacgagttcctttgttagcagactcggcttgtgtgtctggttgtg 32517056  T
Q  220 gtgcctatgaaaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgcattggttaggtttatctgtggtg 314  Q
    ||||  | |||||||||| |||||| |||||||  ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  32517055 gtgcgcaggaaaccgcaactcacttattttgtggttgtaatatttttagctcactttgggatcatattttgcattggttaggtttatctgtggtg 32516961  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 12950176 - 12950112
Alignment:
Q  122 tgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttc 186  Q
    ||||||||||||| |||| ||||||||||| || | |||||||||||| |  |||||||||||||    
T  12950176 tgtgtggcgccttcttcgcaatagacttccaacaaaagacaacttggtgcggcggcgtgttcttc 12950112  T

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Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 33412071 - 33412380
Alignment:
Q  5 ccgtggtgatacggtacgggaagcttatcgttttctcactgataatggtaatgtggtggataggactctggttgaagatgtttggcataagagcataccc 104  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||    
T  33412071 ccgtggttacacggtacgggaagcctatcgttttctcactgataatggtaacgctgtggataagactctggttgaagatgtttggcataagagcataccc 33412170  T
Q  105 tctaaggtgccactatttgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttctgttagctaactcggttt 204  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||  |||||||||    
T  33412171 tctaaggtgtcagtatttgtgtggcgccttttccggaatagacttcctactcgagacaacttggttcatcggcgagttcttctgatagcagactcggttt 33412270  T
Q  205 gtgtgtcaggttgcggtgcctatgaaaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgcattggttaggttt 304  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33412271 gtgtgttaggttgcggtgcttatgaaaccgcaaatcacctgttttgcgtatgtaatatttttagtacgctttgggatcatattttgcattggttaggctt 33412370  T
Q  305 atctgtggtg 314  Q
    ||||||||||    
T  33412371 atctgtggtg 33412380  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 3156225 - 3156274
Alignment:
Q  120 tttgtgtggcgcctttttcggaatagacttcccactagagacaacttggt 169  Q
    ||||||||||||||  |||| ||||||||||| ||||||||||| |||||    
T  3156225 tttgtgtggcgcctccttcgcaatagacttcctactagagacaatttggt 3156274  T

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Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 12678207 - 12677898
Alignment:
Q  5 ccgtggtgatacggtacgggaagcttatcgttttctcactgataatggtaatgtggtggataggactctggttgaagatgtttggcataagagcataccc 104  Q
    ||||||| | |||||||||||||| ||||| |||||||||||||||||||| |  | | |||||||||||||||||||||||||||||||||||||||||    
T  12678207 ccgtggttacacggtacgggaagcatatcgctttctcactgataatggtaacgctgggaataggactctggttgaagatgtttggcataagagcataccc 12678108  T
Q  105 tctaaggtgccactatttgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttctgttagctaactcggttt 204  Q
     |||||||| || ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||  |||||||||    
T  12678107 actaaggtgtcagtatttgtgtggcgccttttccgaaatagacttcctactagagacaacttggttcatcggcgagttcttctgatagcagactcggttt 12678008  T
Q  205 gtgtgtcaggttgcggtgcctatgaaaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgcattggttaggttt 304  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  12678007 gtgtgtcaggttgcggtgcttataaaaccacaaatcacttgttttgcatctgtaatatttttagtacgcattgggatcatattttgcattggttaggctt 12677908  T
Q  305 atctgtggtg 314  Q
    || |||||||    
T  12677907 atttgtggtg 12677898  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 25720807 - 25720889
Alignment:
Q  87 tggcataagagcataccctctaaggtgccactatttgtgtggcgcctttttcggaatagacttcccactagagacaacttggt 169  Q
    ||||||||||  ||||| || |||||| |  |||||||||||| |||| | ||||| |||||||| | |||||||||||||||    
T  25720807 tggcataagaatataccttccaaggtgtctttatttgtgtggcaccttctccggaacagacttcctaatagagacaacttggt 25720889  T

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Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 750992 - 750694
Alignment:
Q  16 cggtacgggaagcttatcgttttctcactgataatggtaatgtggtggataggactctggttgaagatgtttggcataagagcataccctctaaggtgcc 115  Q
    ||||||||||||||||||| ||| ||||||||||||| || |  ||||||||  || ||||||||||||||||||| ||||||||||||||||||||| |    
T  750992 cggtacgggaagcttatcgctttttcactgataatggcaacgctgtggatagatctttggttgaagatgtttggcaaaagagcataccctctaaggtgtc 750893  T
Q  116 actatttgtgtggcgcctttttcggaatagacttcccactagagacaacttggttcatcggcgtgttcttctgttagctaactcggtttgtgtgtcaggt 215  Q
    | ||||||||||||||||||| ||||||||||| || |||||||||||| |||||||  |||| |||||| || ||||  |||||||||||||||||||     
T  750892 attatttgtgtggcgccttttccggaatagactacctactagagacaacctggttcaatggcgagttcttttgatagcagactcggtttgtgtgtcagga 750793  T
Q  216 tgcggtgcctatgaaaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgcattggttaggtttatctgtggtg 314  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  750792 tgcggtgcttatgaaagcgcaaatcacttattttgtgtctgtaatatttttagttcgctttgggatcatattttgcattggttaggtttatctgtggtg 750694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 24662221 - 24662264
Alignment:
Q  120 tttgtgtggcgcctttttcggaatagacttcccactagagacaa 163  Q
    ||||||||||||||| |||| ||||||||||| |||||||||||    
T  24662221 tttgtgtggcgccttcttcgcaatagacttcctactagagacaa 24662264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 39709699 - 39709579
Alignment:
Q  198 tcggtttgtgtgtcaggttgcggtgcctatga---aaccgcaaatcacttgttttgtgtctgtaatatttttagtacgctttgggatcatattttgca-t 293  Q
    ||||||||||||||| | |||||||| |||||   ||||||   |||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |    
T  39709699 tcggtttgtgtgtcatgatgcggtgcttatgatgaaaccgcggctcacttattttgtgtttgtaatatttttagttcgctttgggatcatattttgcatt 39709600  T
Q  294 tggttaggtttatctgtggtg 314  Q
    |||||||| |||||| |||||    
T  39709599 tggttaggcttatctatggtg 39709579  T

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