View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_low_45 (Length: 332)

Name: NF1245_low_45
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_low_45
NF1245_low_45
[»] chr5 (1 HSPs)
chr5 (1-303)||(36419975-36420281)
[»] chr2 (2 HSPs)
chr2 (14-301)||(33411671-33411963)
chr2 (185-250)||(34115774-34115839)
[»] chr3 (2 HSPs)
chr3 (1-304)||(52344664-52344966)
chr3 (99-265)||(32517446-32517617)
[»] chr8 (3 HSPs)
chr8 (18-171)||(12678319-12678471)
chr8 (190-265)||(25720376-25720451)
chr8 (201-263)||(20129021-20129083)
[»] chr1 (1 HSPs)
chr1 (14-301)||(751111-751394)
[»] chr6 (1 HSPs)
chr6 (186-236)||(2821701-2821751)
[»] chr4 (2 HSPs)
chr4 (186-270)||(46610341-46610425)
chr4 (187-270)||(6519723-6519805)
[»] chr7 (1 HSPs)
chr7 (201-263)||(44362988-44363050)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 36419975 - 36420281
Alignment:
Q  1 cccatgccaaaagtctccgcctccactcccactccccacctccaacctcccaaccgtccctactcatgtcctccaccgtacactctttgcgtaaaaacaa 100  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36419975 cccacgccaaaagtctccggctccactcccac-ccccacctccaacctcccaaccgtccctactcatgtcctccaccgtacactctttgcgtaaaaacaa 36420073  T
Q  101 attaaaaagacgggggaatttacaacataaaggtgtatcccccaaccaattatcataccaaaataaagtatccc-----tctcctaccctcctacgaatg 195  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  36420074 atcaaaaagacgggggaatttacaacataaaggtgtatcccccaaccaattatcataccaaaataaagtatccctaccatctcctaccctcctacgaatg 36420173  T
Q  196 ttgtcatcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacggagaagcgaggcgtcctccctcctccaacc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  36420174 ttgtcatcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacggagaatcgaggtgtcctccctcctccaacc 36420273  T
Q  296 gtccccct 303  Q
    ||||||||    
T  36420274 gtccccct 36420281  T

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Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 33411963 - 33411671
Alignment:
Q  14 tctccgcctccactcccactccccacctccaacctcccaaccgtccctactcatgtcctccaccgtacactctttgcgtaaaaacaaattaaaaagacgg 113  Q
    ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||  | | |||||| |||||| |||    
T  33411963 tctccgcctccacgcccaccccccacctccaacctcccaaccttccctactcatatcctccaccgtacactccttgctcacagacaaatcaaaaaggcgg 33411864  T
Q  114 gggaatttacaacataaaggtgtatcccccaaccaattatcataccaaaataaagtat-----ccctctcctaccctcctacgaatgttgtcatcaaacc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || || |||| ||||||||||||||||||||||||||    
T  33411863 gggaatttacaacataaaggtgtatcccccaaccaattatcataccaaaataaagtattcctaccatcacctatcctcctacgaatgttgtcatcaaacc 33411764  T
Q  209 acctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacggagaagcgaggcgtcctccctcctccaaccgtcccc 301  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||||||||||| ||| ||||    
T  33411763 acctcccaacaccctcacctaacccctccctaatcctacaaactgaccgccaccacggagaacagagacgtcctccctcctccacccgccccc 33411671  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 34115839 - 34115774
Alignment:
Q  185 tcctacgaatgttgtcatcaaaccacctcccaacaccctcacctaacccctccctaatcctacaca 250  Q
    |||| |||||||| || ||||||||  |||| |||||||||||||||||||| | || ||||||||    
T  34115839 tccttcgaatgttatcttcaaaccaattccctacaccctcacctaacccctcacgaaccctacaca 34115774  T

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Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 52344664 - 52344966
Alignment:
Q  1 cccatgccaaaagtctccgcctccactcccactccccacctccaacctcccaaccgtccctactcatgtcctccaccgtacactctttgcgtaaaaacaa 100  Q
    |||| ||||| ||||||||||||||||||||| ||||       ||||||||||| ||||| ||||| ||||||||||||||||||||||  | | ||||    
T  52344664 cccacgccaatagtctccgcctccactcccaccccccc------acctcccaaccatccctgctcatatcctccaccgtacactctttgctcacagacaa 52344757  T
Q  101 attaaaaagacgggggaatttacaacataaaggtgtatcccccaaccaattatcataccaaaataaagtatccct-----ctcctaccctcctacgaatg 195  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     |||||| |||| ||||||||    
T  52344758 atcaaaaagacgggggaatttacaacataaaggtgtatcccccaaccaattatcataccaaaacaaagtatccctaccatctcctatcctcttacgaatg 52344857  T
Q  196 ttgtcatcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacggagaagcgaggcgtcctccctcctccaacc 295  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  52344858 ttgttatcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaacgccaccacggagaaccgaggcgtcctccctcctccaacc 52344957  T
Q  296 gtccccctt 304  Q
    | |||||||    
T  52344958 gcccccctt 52344966  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 99 - 265
Target Start/End: Original strand, 32517446 - 32517617
Alignment:
Q  99 aaattaaaaagacgggggaatttacaacataaaggtgtatcccccaaccaattatcataccaaaataaagtatccctctcctaccct-----cctacgaa 193  Q
    |||| |||||| ||||| |||||||||| |||||||  |||||||| ||||||||||| ||||||||| |||| |||  | |  ||      |||||| |    
T  32517446 aaatcaaaaaggcggggaaatttacaacgtaaaggtacatcccccacccaattatcatgccaaaataacgtattcctaccattgccaatcgacctacgga 32517545  T
Q  194 tgttgtcatcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacg 265  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| || |||||||||||||    
T  32517546 tgttgtcatcgaaccacctcccaacaccctcacccaacccctcccgaatcctacaaaccgaccgccaccacg 32517617  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 12678319 - 12678471
Alignment:
Q  18 cgcctccactcccactccccacctccaacctcccaaccgtccctactcatgtcctccaccgtacactctttgcgtaaaaacaaattaaaaagacggggga 117  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||  | | |||||| |||||| |||||||    
T  12678319 cgcctccacgcccaccccccacctccaacctcccaaccttccctactcatatcctccaccgtacactccttgctcacagacaaataaaaaaggcggggga 12678418  T
Q  118 atttacaacataaaggtgtatcccccaaccaattatcataccaaaataaagtat 171  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12678419 atttacaacataaaggtgtat-ccccaaccaattatcataccaaaataaagtat 12678471  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 25720451 - 25720376
Alignment:
Q  190 cgaatgttgtcatcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacg 265  Q
    ||||||| ||||||||||||||  || ||||||||||| |||||||||| | |||||||||| |||| ||||||||    
T  25720451 cgaatgtagtcatcaaaccaccgacccacaccctcacccaacccctcccgagtcctacacaccgaccaccaccacg 25720376  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 20129083 - 20129021
Alignment:
Q  201 atcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccacca 263  Q
    ||||||||| ||||| ||||||||||||| ||| || |||| ||||||||  |||||||||||    
T  20129083 atcaaaccagctccccacaccctcacctatcccttctctaaccctacacagagaccgccacca 20129021  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 751111 - 751394
Alignment:
Q  14 tctccgcctccactcccactccccacctccaacctcccaaccgtccctactcatgtcctccaccgtacactctttgcgtaaaaacaaattaaaaagacgg 113  Q
    |||| |||||||||||||  | ||||||||||||||| ||||  |||||||| | ||||||| ||||||||| || |  | | |||||| |||||| | |    
T  751111 tctctgcctccactcccatcctccacctccaacctccaaacctgccctactcgtatcctccatcgtacactccttactaacagacaaataaaaaaggcag 751210  T
Q  114 gggaatttacaacataaaggtgtatcccccaaccaattatcataccaaaataaagtat-----ccctctcctaccctcctacgaatgttgtcatcaaacc 208  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||     || || || | |||||||||||||||||             
T  751211 gggaatttacaacgtaaaagtgtatcccccaaccaattatcatgccaaaataaagtattcctaccatcaccaatcctcctacgaatgttgt--------- 751301  T
Q  209 acctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacggagaagcgaggcgtcctccctcctccaaccgtcccc 301  Q
    |||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||  | | || ||||||||||||| ||| ||||    
T  751302 acctcccaacaccctcacctaacccctccctaatcctacaaaccgacctccaccacggagaacagtgacgacctccctcctccacccgccccc 751394  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 2821701 - 2821751
Alignment:
Q  186 cctacgaatgttgtcatcaaaccacctcccaacaccctcacctaacccctc 236  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2821701 cctacgaatgttctcatcaaaccacctcccaacaccctcacctaacccctc 2821751  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 46610341 - 46610425
Alignment:
Q  186 cctacgaatgttgtcatcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacggagaa 270  Q
    |||||| ||||  ||||||||||||||||||| ||||||||| |||||||| | || ||||||||| |||| |||||||| ||||    
T  46610341 cctacggatgtaatcatcaaaccacctcccaataccctcacccaacccctctcgaagcctacacaccgacctccaccacgaagaa 46610425  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 6519723 - 6519805
Alignment:
Q  187 ctacgaatgttgtcatcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccaccacggagaa 270  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||||| | ||||||||| || |||  |||||||| ||||    
T  6519723 ctacgaatgttatcatcaaaccacctctca-caccctcacctaacccctctcgaatcctacataccgacttccaccacgaagaa 6519805  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 44362988 - 44363050
Alignment:
Q  201 atcaaaccacctcccaacaccctcacctaacccctccctaatcctacacactgaccgccacca 263  Q
    ||||||||| ||||| ||||||||||||| ||| || |||| ||||||||  |||||||||||    
T  44362988 atcaaaccagctccccacaccctcacctatcccttctctaaccctacacagagaccgccacca 44363050  T

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