View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1245_low_47 (Length: 330)
Name: NF1245_low_47
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 9108496 - 9108794
Alignment:
| Q |
18 |
aacctgtggaaacatctaacgactgacccattcatataataaaacgtcggcataattgtttctcaagctgtccacgttatttttgggccccacgcgtccc |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9108496 |
aacctatggaaacatctaacgactgacccattcatataataaaacgtcggcataattgtttctcaagctgtccacgttatttttgggccccacgcgtccc |
9108595 |
T |
|
| Q |
118 |
ttcaatcttataaatagttaaatacttccacaccctttcaccaccaattcaacaacatacacactttgcattgcttcttcttgattcacaattttccact |
217 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9108596 |
tccaatcttataaatagttaaatatttccacaccctttcaccaccaattcaacaacatacacactttgcattgcttcttcttgattcacaattttccact |
9108695 |
T |
|
| Q |
218 |
gttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaagttttttgccttctttttcgtcgttatctttgctgcctc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9108696 |
gttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaagttttttgccttctttttcgtcgttatctttgctgcctc |
9108794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 82 - 307
Target Start/End: Original strand, 8755352 - 8755572
Alignment:
| Q |
82 |
aagctgtccacgttatttttgggccccacgcgtcccttcaatcttataaatagttaaatacttccacaccctttcaccaccaat---tcaacaacataca |
178 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||||||||||| || |||||| |||||||||| ||| |||| |||||||| |
|
|
| T |
8755352 |
aagctgtccacgttatttgtgggccccacgcgtttcaccaatcttataaata--------ctcccacacactttcaccacaaataattcaaaaacataca |
8755443 |
T |
|
| Q |
179 |
cactttgcattgcttcttcttgattcacaattttccactgttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaag |
278 |
Q |
| |
|
| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
8755444 |
taatttacatttcttcttcttgattcacaattttccactgttttaattttcaattttctctgtttccatatataattttgcaatggcatcatcaatgaag |
8755543 |
T |
|
| Q |
279 |
ttttttgccttctttttcgtcgttatctt |
307 |
Q |
| |
|
||||| |||||||||||||| ||| |||| |
|
|
| T |
8755544 |
tttttcgccttctttttcgttgttgtctt |
8755572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University