View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_48 (Length: 328)
Name: NF1245_low_48
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 8175202 - 8175522
Alignment:
| Q |
11 |
cataggaaataagtaacatgcttgaaaatatgttataggaaactgttttgcaatgaaatataaattgcttga---acattctaagggtgtgtttggatga |
107 |
Q |
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| T |
8175202 |
cataggaaataagtaacatgcttgaaaatatgttataggaaactgttttgcaatgaaatataaattgcttgattaacattctaagggtgtgtttggatga |
8175301 |
T |
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| Q |
108 |
aatttaaaatttgtaaactactcccctcaaattttataaattgcaaactggcccctcaatatttaaaatctcttctggaatcatttttaaccaaaacatt |
207 |
Q |
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| T |
8175302 |
aatttaaaatttgtaaactgctcccctcaaattttataaattgcaaactggcccctcaatatttaaaatctcttctggaatcatttttaaccaaaacatt |
8175401 |
T |
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| Q |
208 |
cacgccatccaaacacactctaaaagtttcctatagataatcttacatccaactttagtctaaatttgcatgtgaagaaactaattacctgttcccaatc |
307 |
Q |
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| T |
8175402 |
cacgccatccaaacacactctaaaagtttcctatagataatcttacatccaactttagtctaaatttgcatgtgaagaaactaattacctgttcccaatc |
8175501 |
T |
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| Q |
308 |
ataaacattaagcattaagtc |
328 |
Q |
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| T |
8175502 |
ataaacattaagcattaagtc |
8175522 |
T |
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