View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_low_5 (Length: 603)

Name: NF1245_low_5
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_low_5
NF1245_low_5
[»] chr1 (10 HSPs)
chr1 (211-570)||(10508029-10508388)
chr1 (215-518)||(10502375-10502679)
chr1 (273-500)||(10499453-10499680)
chr1 (275-510)||(10485065-10485300)
chr1 (54-156)||(10508443-10508545)
chr1 (86-156)||(10485405-10485475)
chr1 (86-156)||(10502737-10502807)
chr1 (86-156)||(10499810-10499880)
chr1 (86-150)||(10480449-10480513)
chr1 (395-508)||(10480100-10480213)
[»] chr8 (1 HSPs)
chr8 (83-144)||(37441832-37441893)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 211 - 570
Target Start/End: Complemental strand, 10508388 - 10508029
Alignment:
Q  211 tgtatatccttatttaaacttagaaccaccaaaagatatcataaaacaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10508388 tgtatatccttatttaaacttagaaccaccaaaagatatcataaaaaaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgat 10508289  T
Q  311 atgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggtagaatactttcagggatattgattgttgatcctgctg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||    
T  10508288 atgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagttttccattaggtagaatacttttagggatattgattgttgatcctcctg 10508189  T
Q  411 ttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatagggaagtccaaagctctgtgctgaaataacaaaattata 510  Q
     ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  10508188 atgcgaagtttgcaccatgtgtgaagttagacccaagagaattaagatatggacttagatagggaagtcgaaagctccgtgctgaaataacaaaattata 10508089  T
Q  511 atattaaattgaattttctttttaaaatatataattcttgactgatataaaaccctatga 570  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10508088 atattaaattgaattttcgttttaaaatatataattcttgactgatataaaaccctatga 10508029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 215 - 518
Target Start/End: Complemental strand, 10502679 - 10502375
Alignment:
Q  215 tatccttatttaaacttagaaccaccaaaagatatcat--aaaacaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgatat 312  Q
    |||||||| |||||||  ||| |||||||||||||||   ||||||| || ||| ||||||||||||||||||||| | |||||| |||||||| |||||    
T  10502679 tatccttaattaaactcggaatcaccaaaagatatcaacgaaaacaacgggaaa-atattttaatttaccttgatcccgaatgagatttgttttggatat 10502581  T
Q  313 gaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggtagaatactttcagggatattgattgttgatcctgctgtt 412  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||| |||||| | |||||||||||||||||||||| |||||    
T  10502580 gaaatctttgaattgaatgtactgaatttgaagagaaaatggactaaatatcccattaggtataatactattagggatattgattgttgatcctcctgtt 10502481  T
Q  413 gcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatagggaagtccaaagctctgtgctgaaataacaaaattataat 512  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10502480 gcgaagtttgcaccatgtgtgaagttagacccaagagaattaagatatggacttagatagggaagtccaaagctctgtgctgaaattacaaaattataat 10502381  T
Q  513 attaaa 518  Q
    | ||||    
T  10502380 actaaa 10502375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 273 - 500
Target Start/End: Complemental strand, 10499680 - 10499453
Alignment:
Q  273 ttaatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattagg 372  Q
    |||||||||||||||| ||||||| ||||| ||| | |||||| ||||||||||||||| | ||||||||||| ||||||||||| |  |||||||||||    
T  10499680 ttaatttaccttgatccctaatgaattttgcttttggtatgaaatctttgaattgaatggactgaatttgaagggaaaatggactaaacattccattagg 10499581  T
Q  373 tagaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatag 472  Q
    || |||||| | ||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||    
T  10499580 tataatactattaggaattttgattgttgaccctgctgttgcaaagtttgcaccatgtgtgaaatttgaccccagagaattaagatatggacttagatag 10499481  T
Q  473 ggaagtccaaagctctgtgctgaaataa 500  Q
    |||||||||||||| |||||||||||||    
T  10499480 ggaagtccaaagctttgtgctgaaataa 10499453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 275 - 510
Target Start/End: Complemental strand, 10485300 - 10485065
Alignment:
Q  275 aatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggta 374  Q
    |||| ||||||||| ||||||| ||||||| | | |||||| ||| ||||||||||||| |||||| ||||  ||||||||||||  |||||||||||||    
T  10485300 aattgaccttgatccctaatgaattttgttctgggtatgaaatctctgaattgaatgtactgaattcgaaggtaaaatggactgaacattccattaggta 10485201  T
Q  375 gaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagataggg 474  Q
     |||||| | ||| || |||||||||||  |||||||||| |||||| |||||| |||||| || |  || ||||||||||| |||||||| ||| ||||    
T  10485200 taatactattaggaattttgattgttgacgctgctgttgcaaagtttacaccatgtgtgaagttgggtccgagagaattaaggtatggactaagaaaggg 10485101  T
Q  475 aagtccaaagctctgtgctgaaataacaaaattata 510  Q
    ||||||||||||||||||||||||  ||||||||||    
T  10485100 aagtccaaagctctgtgctgaaattccaaaattata 10485065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 10508545 - 10508443
Alignment:
Q  54 gtatagtcttgttaccnnnnnnnccaatggtgagatcattttgaccaatatcaaatatgtataaggctttggagaaataatcttctttgggtatcaacgt 153  Q
    ||||||||||||||||       ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10508545 gtatagtcttgttaccaaaaaagccaatagtaagatcattttgaccaatatcaaatatgtataaggctttggagaaataatcttctttgggtatcaacgt 10508446  T
Q  154 tgc 156  Q
    |||    
T  10508445 tgc 10508443  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 10485475 - 10485405
Alignment:
Q  86 agatcattttgaccaatatcaaatatgtataaggctttggagaaataatcttctttgggtatcaacgttgc 156  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||| |||||||||||    
T  10485475 agatcattttgaccaatatcaaatgtgtacaaggctttggaaaaatattcttctttggggatcaacgttgc 10485405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 10502807 - 10502737
Alignment:
Q  86 agatcattttgaccaatatcaaatatgtataaggctttggagaaataatcttctttgggtatcaacgttgc 156  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  10502807 agatcattttgaccaatatcaaatgtgtataaggctttggaaaaatagtcttctttggggatcaaagttgc 10502737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 10499880 - 10499810
Alignment:
Q  86 agatcattttgaccaatatcaaatatgtataaggctttggagaaataatcttctttgggtatcaacgttgc 156  Q
    |||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||| || ||||| |||||    
T  10499880 agatcattttgaccaatatcgaatgtgtataaggctttggaataataatcttctttagggatcaatgttgc 10499810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 10480513 - 10480449
Alignment:
Q  86 agatcattttgaccaatatcaaatatgtataaggctttggagaaataatcttctttgggtatcaa 150  Q
    |||||||||||||||||||||||| |||| || || || |||||||| ||||||||||| |||||    
T  10480513 agatcattttgaccaatatcaaatgtgtacaaagccttagagaaatactcttctttgggcatcaa 10480449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 508
Target Start/End: Complemental strand, 10480213 - 10480100
Alignment:
Q  395 attgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatagggaagtccaaagctctgtgctg 494  Q
    |||||||||  || |||||| ||||||||||||| ||  ||||| | ||| |  |||| |||||||| ||||||||| || |||||||| || || ||||    
T  10480213 attgttgatgatgttgttgcaaagtttgcaccatgtgaaaaattggtccccaatgaatcaagatatgcacttagataagggagtccaaaactttgagctg 10480114  T
Q  495 aaataacaaaatta 508  Q
    |||| |||| ||||    
T  10480113 aaattacaatatta 10480100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 37441893 - 37441832
Alignment:
Q  83 gtgagatcattttgaccaatatcaaatatgtataaggctttggagaaataatcttctttggg 144  Q
    ||||||||||||||||||||||||||  ||||||| || | ||| ||||| |||||||||||    
T  37441893 gtgagatcattttgaccaatatcaaaagtgtataaagcctcggaaaaatactcttctttggg 37441832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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