View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_54 (Length: 305)
Name: NF1245_low_54
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 65 - 290
Target Start/End: Original strand, 33990189 - 33990414
Alignment:
| Q |
65 |
agctgttgctcctaccaaacatgcaaaaggtattatatatacttcacattttcctagctctatctatgatcnnnnnnngtgtgcaaatatttcatcttgc |
164 |
Q |
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| T |
33990189 |
agctattgctcctaccaaacatgcaaaaggtattatatatacttcacattttcctagctctatctatgatctttttttgtgtgcaaatatttcatcttgc |
33990288 |
T |
|
| Q |
165 |
agattatataaaaacagttgacatttttgagaactgtggttgaaccaattttggtatctgcaccctcctaactgttgtttactgtgttttatgattgtag |
264 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33990289 |
agattatacaaaaacagttgacatttttgagaactgtggttgaaccaattttggtatctgcaccctcctaactgttgtttactatgttttatgattgtag |
33990388 |
T |
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| Q |
265 |
agcacctgctgcatcacaggttctgc |
290 |
Q |
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||||||||||||||||| |||||||| |
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| T |
33990389 |
agcacctgctgcatcaccggttctgc |
33990414 |
T |
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