View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1245_low_56 (Length: 302)

Name: NF1245_low_56
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1245_low_56
NF1245_low_56
[»] chr2 (12 HSPs)
chr2 (31-273)||(30051110-30051350)
chr2 (31-273)||(30142154-30142394)
chr2 (16-156)||(30045567-30045707)
chr2 (16-156)||(30050730-30050870)
chr2 (16-156)||(30141774-30141914)
chr2 (16-156)||(30243364-30243504)
chr2 (32-156)||(30045766-30045890)
chr2 (32-156)||(30050929-30051053)
chr2 (32-156)||(30141973-30142097)
chr2 (16-215)||(30089162-30089345)
chr2 (16-215)||(30125766-30125949)
chr2 (31-71)||(30243560-30243600)
[»] chr6 (2 HSPs)
chr6 (61-148)||(34008086-34008173)
chr6 (187-258)||(34008219-34008289)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 31 - 273
Target Start/End: Original strand, 30051110 - 30051350
Alignment:
Q  31 ggtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaatacaatatgtgcatg 130  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||    
T  30051110 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtagtgaaaaaccacagccaagtacaatatgtgcatg 30051209  T
Q  131 gatggaaacttacaaaataaagcttaaatggcttaacaatatcaaagccaaataacaccaaaatcatgataaaaagcaccattataacaaaagatttact 230  Q
    |||||||||||||||||||||||||| |    | || |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30051210 gatggaaacttacaaaataaagcttataaatataaata--atcaaagccaaatgacaccaaaatcatgataaaaagcaccattataacaaaagatgtact 30051307  T
Q  231 cattgcaccacttacaaaacactctatcggtcaacagagaaac 273  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  30051308 cattgcaccacttacaaaacactctatcggtcaacaaagaaac 30051350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 31 - 273
Target Start/End: Original strand, 30142154 - 30142394
Alignment:
Q  31 ggtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaatacaatatgtgcatg 130  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||    
T  30142154 ggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaaggcaaaatgaatgtagtgaaaaaccacagccaagtacaatatgtgcatg 30142253  T
Q  131 gatggaaacttacaaaataaagcttaaatggcttaacaatatcaaagccaaataacaccaaaatcatgataaaaagcaccattataacaaaagatttact 230  Q
    |||||||||||||||||||||||||| |    | || |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30142254 gatggaaacttacaaaataaagcttataaatataaata--atcaaagccaaatgacaccaaaatcatgataaaaagcaccattataacaaaagatgtact 30142351  T
Q  231 cattgcaccacttacaaaacactctatcggtcaacagagaaac 273  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  30142352 cattgcaccacttacaaaacactctatcggtcaacaaagaaac 30142394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 30045567 - 30045707
Alignment:
Q  16 atagtaacagagttgggtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaa 115  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  30045567 atagtaacagagttgggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaag 30045666  T
Q  116 tacaatatgtgcatggatggaaacttacaaaataaagctta 156  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  30045667 tacaatatgtgcatggacggaaaattacaaaataaggctta 30045707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 30050730 - 30050870
Alignment:
Q  16 atagtaacagagttgggtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaa 115  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  30050730 atagtaacagagttgggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaag 30050829  T
Q  116 tacaatatgtgcatggatggaaacttacaaaataaagctta 156  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  30050830 tacaatatgtgcatggacggaaaattacaaaataaggctta 30050870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 30141774 - 30141914
Alignment:
Q  16 atagtaacagagttgggtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaa 115  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  30141774 atagtaacagagttgggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaag 30141873  T
Q  116 tacaatatgtgcatggatggaaacttacaaaataaagctta 156  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  30141874 tacaatatgtgcatggacggaaaattacaaaataaggctta 30141914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 30243364 - 30243504
Alignment:
Q  16 atagtaacagagttgggtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaa 115  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||     
T  30243364 atagtaacagagttgggtatgaaaataaagaatttgagtacaaatttaatcaagttttttattaaagacaaaatgaatgtattgaaaaacaacaaccaag 30243463  T
Q  116 tacaatatgtgcatggatggaaacttacaaaataaagctta 156  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  30243464 tacaatatgtgcatggacggaaaattacaaaataaggctta 30243504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 30045766 - 30045890
Alignment:
Q  32 gtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaatacaatatgtgcatgg 131  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30045766 gtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatgg 30045865  T
Q  132 atggaaacttacaaaataaagctta 156  Q
    | ||||| ||||||||||| |||||    
T  30045866 acggaaaattacaaaataaggctta 30045890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 30050929 - 30051053
Alignment:
Q  32 gtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaatacaatatgtgcatgg 131  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30050929 gtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatgg 30051028  T
Q  132 atggaaacttacaaaataaagctta 156  Q
    | ||||| ||||||||||| |||||    
T  30051029 acggaaaattacaaaataaggctta 30051053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 30141973 - 30142097
Alignment:
Q  32 gtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaatacaatatgtgcatgg 131  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30141973 gtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatgg 30142072  T
Q  132 atggaaacttacaaaataaagctta 156  Q
    | ||||| ||||||||||| |||||    
T  30142073 acggaaaattacaaaataaggctta 30142097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 30089162 - 30089345
Alignment:
Q  16 atagtaacagagttgggtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaa 115  Q
    |||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||     
T  30089162 atagtaacaccgttgggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaatcacaaccaag 30089261  T
Q  116 tacaatatgtgcatggatggaaacttacaaaataaagcttaaatggcttaacaatatcaaagccaaataacaccaaaatcatgataaaaagcaccattat 215  Q
    ||||| ||            || |||     |||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30089262 tacaaaat-----------aaagctt-----ataaatataaaatggcttaacaatatcaaagccaaatgacaccaaaatcatgataaaaagcaccattat 30089345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 30125766 - 30125949
Alignment:
Q  16 atagtaacagagttgggtatggaaataaagaatttcagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaa 115  Q
    |||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||     
T  30125766 atagtaacaccgttgggtatgaaaataaagaatttgagtacaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaatcacaaccaag 30125865  T
Q  116 tacaatatgtgcatggatggaaacttacaaaataaagcttaaatggcttaacaatatcaaagccaaataacaccaaaatcatgataaaaagcaccattat 215  Q
    ||||| ||            || |||     |||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30125866 tacaaaat-----------aaagctt-----ataaatataaaatggcttaacaatatcaaagccaaatgacaccaaaatcatgataaaaagcaccattat 30125949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 30243560 - 30243600
Alignment:
Q  31 ggtatggaaataaagaatttcagtacaaatttcatcaagtt 71  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  30243560 ggtatgaaaataaagaatttgagtacaaatttcatcaagtt 30243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 34008086 - 34008173
Alignment:
Q  61 ttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaaatacaatatgtgcatggatggaaacttacaaaat 148  Q
    ||||||||||||||||||| |  ||||||||| |||||||||||||||| | || |||||||| |||| ||||| ||| |||||||||    
T  34008086 ttcatcaagttttttattacatgcaaaatgaaggtattgaaaaaccacacctaagtacaatatatgcaaggatgaaaaattacaaaat 34008173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 34008219 - 34008289
Alignment:
Q  187 accaaaatcatgataaaaagcaccattataacaaaagatttactcattgcaccacttacaaaacactctatc 258  Q
    |||||||||||||||||| ||||||||  ||||| |||| ||  ||| ||||||||||||||||||||||||    
T  34008219 accaaaatcatgataaaa-gcaccatttcaacaatagatgtatacatggcaccacttacaaaacactctatc 34008289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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