View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_6 (Length: 599)
Name: NF1245_low_6
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 104 - 438
Target Start/End: Original strand, 21623778 - 21624113
Alignment:
| Q |
104 |
ggtacaatcaggggaccatattaattaaagtagaaaacaaacacacacgtctgtgttatgaattatgtgtatcaattcttccctcgtgtacaatttgtaa |
203 |
Q |
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| T |
21623778 |
ggtacaatcaggggaccatattaattaaagtagaaaacaaacacacacgtctgtgttatgaattatgtgtatcaattcttccctcgtgtacaatttgtaa |
21623877 |
T |
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| Q |
204 |
ggagtcatcatcgttattgctcatcatgtaatcatgcttctacatttctctatatataggtgttgtgcatacaaattgtgaagg-ttggaattgatctga |
302 |
Q |
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| T |
21623878 |
ggagtcatcatcgctattgctcatcatgtaatcatgcttctacatttctctatatataggtgttgtgcatacaaattgtgaaggtttggaattgatctga |
21623977 |
T |
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| Q |
303 |
aataaagagatggaggaagaaagtgagatgaaagaatcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaag |
402 |
Q |
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| T |
21623978 |
aataaagagatggaggaagaaagtgagatgaaagaatcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaag |
21624077 |
T |
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| Q |
403 |
atgctgctattgagcttggaaatgagttggtaatgc |
438 |
Q |
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| T |
21624078 |
atgctgctattgagcttggaaatgagttggtaatgc |
21624113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 481 - 590
Target Start/End: Original strand, 21624142 - 21624251
Alignment:
| Q |
481 |
tttctttcttaaaatttagacggggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgcatgcatgtttaaattg |
580 |
Q |
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| T |
21624142 |
tttctttcttaaaatttagaccgggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgcacgcatgtttaaattg |
21624241 |
T |
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| Q |
581 |
tatttcatct |
590 |
Q |
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|||||||||| |
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| T |
21624242 |
tatttcatct |
21624251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 21623703 - 21623741
Alignment:
| Q |
29 |
agaccaaaccacacaatcatctttacataggaccacggg |
67 |
Q |
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| T |
21623703 |
agaccaaaccacacaatcatctttacataggaccacggg |
21623741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 40466228 - 40466130
Alignment:
| Q |
338 |
atcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaat |
436 |
Q |
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||||||||||||||| |||||||| |||||||||||||| ||||||||||| | ||||||||| |||||||||||||| |||||||| || |||||||| |
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| T |
40466228 |
atcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggtaat |
40466130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 28272022 - 28271927
Alignment:
| Q |
339 |
tcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggta |
434 |
Q |
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|||||||| |||||| ||||||| |||||||| ||||||||||| || || ||||| ||| |||||||||| ||||| ||||||||||| |||||| |
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| T |
28272022 |
tcaaagttcaagagggtttgtgtcttttgtggaagtagtcctggcaagaaaagtagttatcaagatgctgccattgaacttggaaatgaattggta |
28271927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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