View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1245_low_63 (Length: 278)
Name: NF1245_low_63
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 21307259 - 21307501
Alignment:
| Q |
10 |
tcatccttagcaatcacaacaaaatgtccttttttcacatcctttgccacataccttgatttattatcctttcttcccattaatagggttttttggagct |
109 |
Q |
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| T |
21307259 |
tcatccttagcaatcacaacaaaatgtccttttttcacatcctttgcctcataccttgatttattatcctttcttcccaataatagggttttttggagct |
21307358 |
T |
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| Q |
110 |
ttttgaagacattattcttgagcttcaaaattccacctacaacaaccattttgattacaagttgtttttaagatgtatatgtgtacaagatagatttgtt |
209 |
Q |
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| T |
21307359 |
ttttgaagacattattcttgagcttcaaaattccacctacaacaaccattttgatttctagttgtttttaagatgtatatgtgttcaagatagatttgtt |
21307458 |
T |
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| Q |
210 |
ttatgatg-tttcattaatttaatatgcttaatatttatagtg |
251 |
Q |
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| T |
21307459 |
ttatgatgatttgatgaatttaatatgcttaatatttatagtg |
21307501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 21297840 - 21298082
Alignment:
| Q |
10 |
tcatccttagcaatcacaacaaaatgtccttttttcacatcctttgccacataccttgatttattatcctttcttcccattaatagggttttttggagct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
21297840 |
tcatccttagcaatcacaacaaaatgtccttttttcacatcctttgccacataccttgatttataatcatttcttcccattaatagggttttgtggagct |
21297939 |
T |
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| Q |
110 |
ttttgaagacattattcttgagcttcaaaattccacctacaacaaccattttgattacaagttgtttttaagatgtatatgtgtacaagatagatttgtt |
209 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21297940 |
taatgaagacattattcttgagcttcaaaattccacctacaacaaccattttgatttctagttgtttttaagatgtatatgtgttcaagatagatttgtt |
21298039 |
T |
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| Q |
210 |
ttatgatg-tttcattaatttaatatgcttaatatttatagtg |
251 |
Q |
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| T |
21298040 |
ttatgatgatttgatcaatttaatatgctttatatttatagtg |
21298082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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