View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1245_low_64 (Length: 275)
Name: NF1245_low_64
Description: NF1245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1245_low_64 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 47 - 241
Target Start/End: Complemental strand, 7195784 - 7195590
Alignment:
| Q |
47 |
gatgatgatgttggctgtttttgtaacttctttgacagattagtattccagtagttcttgatttcattgtctgttcgtcctggtagtctcttagctatca |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7195784 |
gatgatgatgttggctgtttttgtaacttctttgacagattagtattccagtagttcttgatttcattgtctgttcgtcctggtagtctcttagctatca |
7195685 |
T |
|
| Q |
147 |
aagaccatctatatagaacaaatatcataaattttagtcatttataataatgaaggagaatgaattgtgatgattcgattcctgactagaattat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7195684 |
aagaccatctatatagaacaaatatcataaattttagtcatttataataatgaaggagaatgaattgtgatgattcgattcctgactagaattat |
7195590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 9622127 - 9622088
Alignment:
| Q |
92 |
ttccagtagttcttgatttcattgtctgttcgtcctggta |
131 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9622127 |
ttccagtagttctttatttcattgtctgttcgtcctggta |
9622088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 52071522 - 52071587
Alignment:
| Q |
92 |
ttccagtagttcttgatttcattgtctgttcgtcctggtagtctcttagctatcaaagaccatcta |
157 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||||||||| |||||| | |||||||||| |
|
|
| T |
52071522 |
ttccaataattcttgatttcattgtctgttcgccctggtagtcttccagctattagagaccatcta |
52071587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 31941959 - 31941929
Alignment:
| Q |
92 |
ttccagtagttcttgatttcattgtctgttc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31941959 |
ttccagtagttcttgatttcattgtctgttc |
31941929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 32000918 - 32000888
Alignment:
| Q |
92 |
ttccagtagttcttgatttcattgtctgttc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32000918 |
ttccagtagttcttgatttcattgtctgttc |
32000888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 41544696 - 41544634
Alignment:
| Q |
91 |
attccagtagttcttgatttcattgtctgttcgtcctggtagtctcttagctatcaaagacca |
153 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
41544696 |
attccaatagttcttaatttcattgtctgttcgccctggaagtcttcccgctatcaaagacca |
41544634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 36246578 - 36246538
Alignment:
| Q |
92 |
ttccagtagttcttgatttcattgtctgttcgtcctggtag |
132 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
36246578 |
ttccaataattcttgatttcattgtctgttcttcctggtag |
36246538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 27632581 - 27632617
Alignment:
| Q |
93 |
tccagtagttcttgatttcattgtctgttcgtcctgg |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
27632581 |
tccaatagttcttgatttcattgtctgttcttcctgg |
27632617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University